Wall clock time and date at job start Thu Apr 9 2020 11:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00082 * 2 1 4 4 C 1.53005 * 109.46985 * 199.77757 * 3 2 1 5 5 H 1.08996 * 109.47108 * 300.96887 * 4 3 2 6 6 O 1.42898 * 109.47075 * 60.96699 * 4 3 2 7 7 C 1.52996 * 109.47170 * 180.96903 * 4 3 2 8 8 N 1.46894 * 109.47239 * 179.97438 * 7 4 3 9 9 C 1.46903 * 111.00515 * 179.97438 * 8 7 4 10 10 C 1.50691 * 109.47409 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00222 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99653 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99768 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00387 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46905 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47451 * 210.00042 * 14 12 10 17 17 H 1.48500 * 109.46873 * 330.00205 * 14 12 10 18 18 C 1.46900 * 110.99360 * 123.95153 * 2 1 3 19 19 C 1.53009 * 117.49551 * 124.79467 * 18 2 1 20 20 C 1.52995 * 117.50141 * 56.13691 * 18 2 1 21 21 H 1.09005 * 109.46749 * 64.62678 * 1 2 3 22 22 H 1.09000 * 109.47538 * 184.62440 * 1 2 3 23 23 H 1.09003 * 109.47343 * 304.62487 * 1 2 3 24 24 H 1.08998 * 109.47560 * 79.77592 * 3 2 1 25 25 H 1.08995 * 109.47118 * 319.77128 * 3 2 1 26 26 H 0.96697 * 114.00108 * 60.00104 * 6 4 3 27 27 H 1.09006 * 109.47065 * 299.99938 * 7 4 3 28 28 H 1.09002 * 109.47071 * 59.99632 * 7 4 3 29 29 H 1.00905 * 111.00216 * 303.95235 * 8 7 4 30 30 H 1.09007 * 109.46886 * 299.99985 * 9 8 7 31 31 H 1.09000 * 109.46878 * 59.99574 * 9 8 7 32 32 H 0.96999 * 119.99844 * 180.02562 * 13 12 10 33 33 H 1.08995 * 115.55634 * 270.45810 * 18 2 1 34 34 H 1.08991 * 117.49884 * 359.97438 * 19 18 2 35 35 H 1.08997 * 117.49548 * 145.01761 * 19 18 2 36 36 H 1.09001 * 117.50187 * 214.97377 * 20 18 2 37 37 H 1.08996 * 117.50165 * 359.96893 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4455 1.3610 -0.4881 5 1 4.0444 0.7268 0.1655 6 8 3.4954 0.8516 -1.8223 7 6 4.0016 2.7861 -0.4652 8 7 5.3939 2.7761 -0.9332 9 6 5.9619 4.1309 -0.9253 10 6 7.3875 4.0808 -1.4110 11 1 7.8278 3.1369 -1.6967 12 6 8.1297 5.2400 -1.4908 13 7 9.3738 5.1964 -1.9152 14 14 7.3684 6.8725 -0.9961 15 1 7.6083 7.1126 0.4496 16 1 7.9847 7.9666 -1.7886 17 1 5.9067 6.8359 -1.2559 18 6 1.9953 -0.7660 1.1377 19 6 2.9715 -1.9039 0.8321 20 6 1.5424 -2.2204 1.2802 21 1 -0.3633 0.4404 -0.9286 22 1 -0.3634 -1.0243 0.0829 23 1 -0.3634 0.5839 0.8457 24 1 1.9554 1.7760 1.0113 25 1 1.3932 1.9917 -0.6637 26 1 2.9834 1.3679 -2.4598 27 1 3.4027 3.4204 -1.1189 28 1 3.9635 3.1747 0.5525 29 1 5.9561 2.1448 -0.3823 30 1 5.3768 4.7740 -1.5828 31 1 5.9369 4.5293 0.0889 32 1 9.8961 6.0119 -1.9709 33 1 2.1564 -0.1971 2.0533 34 1 3.2228 -2.0844 -0.2130 35 1 3.7744 -2.0837 1.5469 36 1 1.4059 -2.6084 2.2896 37 1 0.8536 -2.6088 0.5301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:47 Heat of formation + Delta-G solvation = -16.244918 kcal Electronic energy + Delta-G solvation = -15950.736628 eV Core-core repulsion = 13343.037078 eV Total energy + Delta-G solvation = -2607.699550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.98027 -37.10606 -34.74699 -33.99645 -32.32378 -30.02084 -27.61374 -25.55090 -23.63342 -22.35430 -21.38040 -21.09269 -20.32230 -17.03716 -16.58483 -16.05955 -15.60317 -15.06058 -14.88534 -14.38606 -14.03041 -13.67302 -13.39993 -12.99904 -12.74177 -12.42105 -12.00866 -11.96442 -11.74110 -11.49952 -11.42510 -10.72240 -10.70393 -10.56851 -10.44933 -10.33254 -9.86379 -9.50255 -9.22065 -8.58767 -8.38555 -7.42673 -6.04243 -4.01995 3.28093 3.35640 3.38089 3.56753 3.67035 4.42595 4.61423 4.76446 4.80285 4.86673 5.04327 5.11433 5.21585 5.26965 5.30164 5.44938 5.48905 5.50741 5.61325 5.62785 5.69092 5.71721 5.89907 6.01239 6.14485 6.34751 6.75895 6.86435 6.96992 7.01014 7.61935 7.90442 8.11380 8.36847 8.67389 9.05180 9.57532 11.09198 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.048847 B = 0.004692 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.086098 B = 5966.764786 C = 6206.034460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.504 5.504 3 C 0.026 3.974 4 C 0.122 3.878 5 H 0.092 0.908 6 O -0.533 6.533 7 C 0.024 3.976 8 N -0.668 5.668 9 C 0.164 3.836 10 C -0.515 4.515 11 H 0.080 0.920 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.879 3.121 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.268 1.268 18 C 0.002 3.998 19 C -0.158 4.158 20 C -0.179 4.179 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.022 0.978 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.366 0.634 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.336 0.664 30 H 0.025 0.975 31 H -0.023 1.023 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.628 -10.039 6.861 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.227 5.227 3 C -0.103 4.103 4 C 0.061 3.939 5 H 0.110 0.890 6 O -0.336 6.336 7 C -0.107 4.107 8 N -0.299 5.299 9 C 0.036 3.964 10 C -0.553 4.553 11 H 0.098 0.902 12 C -0.134 4.134 13 N -0.539 5.539 14 Si 0.706 3.294 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.107 4.107 19 C -0.196 4.196 20 C -0.216 4.216 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.212 0.788 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.153 0.847 30 H 0.043 0.957 31 H -0.006 1.006 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.109 -10.561 5.999 21.805 hybrid contribution -0.837 2.088 1.816 2.891 sum -18.946 -8.474 7.815 22.177 Atomic orbital electron populations 1.22386 0.87387 1.01858 1.00548 1.61687 1.07031 1.13418 1.40570 1.22906 0.98011 0.88846 1.00513 1.21774 0.92696 0.94040 0.85343 0.88973 1.86606 1.74555 1.55387 1.17094 1.22636 0.93702 0.96386 0.97953 1.60360 1.00070 1.11509 1.57926 1.20024 0.96202 0.86077 0.94088 1.21075 0.94464 0.96189 1.43574 0.90193 1.24916 0.94711 0.98851 0.94911 1.69906 1.08421 1.28337 1.47267 0.86810 0.79898 0.83993 0.78674 1.20408 1.21121 1.19278 1.22487 1.05049 0.89707 0.93444 1.23101 0.92186 1.01040 1.03227 1.23062 0.99148 0.97088 1.02309 0.91370 0.91337 0.95921 0.93945 0.90532 0.78792 0.91587 0.95963 0.84684 0.95698 1.00551 0.92662 0.89591 0.87608 0.88885 0.88972 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.42 60.07 0.57 0.80 16 2 N -0.50 -5.66 4.72 -234.89 -1.11 -6.77 16 3 C 0.03 0.30 4.65 -3.82 -0.02 0.28 16 4 C 0.12 1.73 3.25 -26.73 -0.09 1.64 16 5 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 6 O -0.53 -8.38 13.09 -35.23 -0.46 -8.84 16 7 C 0.02 0.40 5.35 -3.83 -0.02 0.38 16 8 N -0.67 -14.19 6.36 -115.06 -0.73 -14.92 16 9 C 0.16 4.07 4.51 -4.98 -0.02 4.05 16 10 C -0.51 -15.08 9.87 -34.44 -0.34 -15.42 16 11 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 14 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 18 C 0.00 0.02 4.66 -67.71 -0.32 -0.30 16 19 C -0.16 -1.67 10.46 -26.69 -0.28 -1.95 16 20 C -0.18 -1.60 9.67 -26.70 -0.26 -1.86 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.57 6.62 -51.93 -0.34 0.23 16 23 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 24 H 0.04 0.47 7.83 -51.93 -0.41 0.06 16 25 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 26 H 0.37 4.76 9.05 45.56 0.41 5.18 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.34 7.05 8.72 -39.29 -0.34 6.70 16 30 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 31 H -0.02 -0.57 7.57 -51.93 -0.39 -0.96 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.09 0.90 7.89 -51.93 -0.41 0.49 16 34 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.86 7.26 -51.93 -0.38 0.48 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -32.12 304.79 -8.07 -40.19 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.60 Total: 6.35 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.87 Total: -10.47 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -1.07 Total: -48.99 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.46 Total: -8.84 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.12 -8.07 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.945 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds