Wall clock time and date at job start Thu Apr 9 2020 11:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00082 * 2 1 4 4 C 1.53005 * 109.46985 * 199.77757 * 3 2 1 5 5 H 1.08996 * 109.47108 * 300.96887 * 4 3 2 6 6 O 1.42898 * 109.47075 * 60.96699 * 4 3 2 7 7 C 1.52996 * 109.47170 * 180.96903 * 4 3 2 8 8 N 1.46894 * 109.47239 * 179.97438 * 7 4 3 9 9 C 1.46903 * 111.00515 * 179.97438 * 8 7 4 10 10 C 1.50691 * 109.47409 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00222 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99653 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99768 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00387 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46905 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47451 * 210.00042 * 14 12 10 17 17 H 1.48500 * 109.46873 * 330.00205 * 14 12 10 18 18 C 1.46900 * 110.99360 * 123.95153 * 2 1 3 19 19 C 1.53009 * 117.49551 * 124.79467 * 18 2 1 20 20 C 1.52995 * 117.50141 * 56.13691 * 18 2 1 21 21 H 1.09005 * 109.46749 * 64.62678 * 1 2 3 22 22 H 1.09000 * 109.47538 * 184.62440 * 1 2 3 23 23 H 1.09003 * 109.47343 * 304.62487 * 1 2 3 24 24 H 1.08998 * 109.47560 * 79.77592 * 3 2 1 25 25 H 1.08995 * 109.47118 * 319.77128 * 3 2 1 26 26 H 0.96697 * 114.00108 * 60.00104 * 6 4 3 27 27 H 1.09006 * 109.47065 * 299.99938 * 7 4 3 28 28 H 1.09002 * 109.47071 * 59.99632 * 7 4 3 29 29 H 1.00905 * 111.00216 * 303.95235 * 8 7 4 30 30 H 1.09007 * 109.46886 * 299.99985 * 9 8 7 31 31 H 1.09000 * 109.46878 * 59.99574 * 9 8 7 32 32 H 0.96999 * 119.99844 * 180.02562 * 13 12 10 33 33 H 1.08995 * 115.55634 * 270.45810 * 18 2 1 34 34 H 1.08991 * 117.49884 * 359.97438 * 19 18 2 35 35 H 1.08997 * 117.49548 * 145.01761 * 19 18 2 36 36 H 1.09001 * 117.50187 * 214.97377 * 20 18 2 37 37 H 1.08996 * 117.50165 * 359.96893 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4455 1.3610 -0.4881 5 1 4.0444 0.7268 0.1655 6 8 3.4954 0.8516 -1.8223 7 6 4.0016 2.7861 -0.4652 8 7 5.3939 2.7761 -0.9332 9 6 5.9619 4.1309 -0.9253 10 6 7.3875 4.0808 -1.4110 11 1 7.8278 3.1369 -1.6967 12 6 8.1297 5.2400 -1.4908 13 7 9.3738 5.1964 -1.9152 14 14 7.3684 6.8725 -0.9961 15 1 7.6083 7.1126 0.4496 16 1 7.9847 7.9666 -1.7886 17 1 5.9067 6.8359 -1.2559 18 6 1.9953 -0.7660 1.1377 19 6 2.9715 -1.9039 0.8321 20 6 1.5424 -2.2204 1.2802 21 1 -0.3633 0.4404 -0.9286 22 1 -0.3634 -1.0243 0.0829 23 1 -0.3634 0.5839 0.8457 24 1 1.9554 1.7760 1.0113 25 1 1.3932 1.9917 -0.6637 26 1 2.9834 1.3679 -2.4598 27 1 3.4027 3.4204 -1.1189 28 1 3.9635 3.1747 0.5525 29 1 5.9561 2.1448 -0.3823 30 1 5.3768 4.7740 -1.5828 31 1 5.9369 4.5293 0.0889 32 1 9.8961 6.0119 -1.9709 33 1 2.1564 -0.1971 2.0533 34 1 3.2228 -2.0844 -0.2130 35 1 3.7744 -2.0837 1.5469 36 1 1.4059 -2.6084 2.2896 37 1 0.8536 -2.6088 0.5301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:45 Heat of formation + Delta-G solvation = -42.995839 kcal Electronic energy + Delta-G solvation = -15951.896635 eV Core-core repulsion = 13343.037078 eV Total energy + Delta-G solvation = -2608.859557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.90244 -38.25439 -36.38206 -34.87593 -34.42855 -31.38007 -29.19195 -26.71611 -24.81595 -23.14861 -22.98178 -22.57647 -21.17914 -19.03469 -17.75928 -17.17869 -16.83465 -16.33830 -16.02613 -15.79125 -15.47178 -15.15730 -14.62115 -14.37262 -13.97852 -13.71384 -13.58675 -13.01066 -12.80213 -12.75390 -12.54227 -12.44583 -12.19333 -11.82914 -11.77470 -11.52945 -11.26823 -11.10765 -10.82885 -10.67285 -9.20500 -9.10090 -8.30705 -6.35867 1.33749 1.36595 1.47893 2.33609 2.72819 2.89625 3.02914 3.42136 3.74683 3.94668 4.03594 4.09329 4.19378 4.29025 4.36625 4.37478 4.54451 4.61334 4.72381 4.73495 4.78086 4.79557 4.85497 5.02442 5.04922 5.12109 5.19368 5.33720 5.51435 5.92970 6.08700 6.17263 6.53828 6.64729 6.74562 7.08197 7.29135 8.86448 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.048847 B = 0.004692 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.086098 B = 5966.764786 C = 6206.034460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.520 5.520 3 C 0.035 3.965 4 C 0.132 3.868 5 H 0.080 0.920 6 O -0.554 6.554 7 C 0.026 3.974 8 N -0.682 5.682 9 C 0.175 3.825 10 C -0.531 4.531 11 H 0.033 0.967 12 C 0.006 3.994 13 N -0.949 5.949 14 Si 0.956 3.044 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.249 1.249 18 C -0.008 4.008 19 C -0.172 4.172 20 C -0.159 4.159 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.029 0.971 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.377 0.623 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.333 0.667 30 H 0.027 0.973 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.191 -9.145 8.028 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.243 5.243 3 C -0.094 4.094 4 C 0.071 3.929 5 H 0.098 0.902 6 O -0.359 6.359 7 C -0.104 4.104 8 N -0.312 5.312 9 C 0.047 3.953 10 C -0.569 4.569 11 H 0.052 0.948 12 C -0.191 4.191 13 N -0.589 5.589 14 Si 0.779 3.221 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.173 1.173 18 C -0.116 4.116 19 C -0.210 4.210 20 C -0.196 4.196 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.225 0.775 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.150 0.850 30 H 0.045 0.955 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.704 -9.689 7.166 23.956 hybrid contribution -0.001 1.684 1.409 2.196 sum -20.705 -8.005 8.575 23.797 Atomic orbital electron populations 1.22422 0.85910 1.02567 1.01148 1.61618 1.08393 1.13181 1.41131 1.22740 0.96012 0.89528 1.01086 1.21652 0.94428 0.92100 0.84687 0.90249 1.86577 1.75169 1.56107 1.18096 1.22734 0.90790 0.98264 0.98605 1.60260 1.02333 1.09606 1.59012 1.19768 0.93472 0.88084 0.94008 1.21360 0.97036 0.94660 1.43892 0.94847 1.25943 0.95066 1.03518 0.94622 1.70068 1.10293 1.29874 1.48662 0.85587 0.79761 0.77963 0.78788 1.19044 1.20539 1.17255 1.22572 1.05325 0.90331 0.93411 1.23056 0.93489 1.02331 1.02167 1.23113 0.97540 0.95678 1.03250 0.90827 0.90650 0.95193 0.93110 0.89197 0.77545 0.90656 0.94695 0.84986 0.95547 0.99702 0.92301 0.89266 0.89804 0.88353 0.87124 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.42 127.69 1.20 1.62 16 2 N -0.52 -10.67 4.72 -897.04 -4.24 -14.91 16 3 C 0.04 0.73 4.65 86.31 0.40 1.13 16 4 C 0.13 3.56 3.25 30.59 0.10 3.66 16 5 H 0.08 2.35 7.71 -2.39 -0.02 2.33 16 6 O -0.55 -17.04 13.09 -148.98 -1.95 -18.99 16 7 C 0.03 0.82 5.35 86.30 0.46 1.28 16 8 N -0.68 -28.69 6.36 -517.94 -3.29 -31.99 16 9 C 0.18 8.54 4.51 85.55 0.39 8.92 16 10 C -0.53 -31.76 9.87 25.60 0.25 -31.50 16 11 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 12 C 0.01 0.35 5.47 84.65 0.46 0.81 16 13 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 14 Si 0.96 44.38 27.47 68.60 1.88 46.26 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 18 C -0.01 -0.15 4.66 44.92 0.21 0.06 16 19 C -0.17 -3.54 10.46 30.62 0.32 -3.22 16 20 C -0.16 -2.54 9.67 30.62 0.30 -2.24 16 21 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 22 H 0.07 1.06 6.62 -2.39 -0.02 1.05 16 23 H 0.03 0.43 8.13 -2.39 -0.02 0.41 16 24 H 0.05 0.98 7.83 -2.39 -0.02 0.96 16 25 H 0.09 1.62 7.94 -2.39 -0.02 1.60 16 26 H 0.38 9.39 9.05 -74.06 -0.67 8.72 16 27 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.33 14.18 8.72 -89.69 -0.78 13.39 16 30 H 0.03 1.28 7.20 -2.38 -0.02 1.27 16 31 H -0.01 -0.68 7.57 -2.39 -0.02 -0.70 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 33 H 0.09 1.68 7.89 -2.39 -0.02 1.67 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.55 7.26 -2.39 -0.02 1.53 16 Total: -1.00 -69.65 304.79 -3.66 -73.31 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.46 Total: 25.89 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.09 Total: -19.48 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -7.23 Total: -106.99 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.95 Total: -18.99 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -69.65 -3.66 -73.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.314 kcal (2) G-P(sol) polarization free energy of solvation -69.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds