Wall clock time and date at job start Thu Apr 9 2020 11:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 111.00007 * 2 1 4 4 C 1.53003 * 109.46553 * 160.29482 * 3 2 1 5 5 H 1.08996 * 109.47125 * 54.98452 * 4 3 2 6 6 O 1.42896 * 109.47202 * 294.98473 * 4 3 2 7 7 C 1.53002 * 109.46661 * 174.98802 * 4 3 2 8 8 N 1.46901 * 109.46710 * 185.00072 * 7 4 3 9 9 C 1.46905 * 110.99858 * 179.97438 * 8 7 4 10 10 C 1.50699 * 109.47309 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99926 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00127 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00051 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99936 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47127 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46937 * 120.00394 * 14 12 10 17 17 H 1.48493 * 109.46904 * 240.00280 * 14 12 10 18 18 C 1.46899 * 110.99603 * 236.04611 * 2 1 3 19 19 C 1.53000 * 117.50360 * 7.57588 * 18 2 1 20 20 C 1.52997 * 60.00027 * 252.51348 * 19 18 2 21 21 H 1.08998 * 109.47658 * 178.94519 * 1 2 3 22 22 H 1.08996 * 109.46880 * 298.94810 * 1 2 3 23 23 H 1.08996 * 109.46896 * 58.94355 * 1 2 3 24 24 H 1.08993 * 109.47274 * 280.29466 * 3 2 1 25 25 H 1.09000 * 109.47189 * 40.29903 * 3 2 1 26 26 H 0.96701 * 114.00169 * 299.99671 * 6 4 3 27 27 H 1.09000 * 109.47024 * 304.99836 * 7 4 3 28 28 H 1.08997 * 109.47533 * 65.00309 * 7 4 3 29 29 H 1.00906 * 111.00359 * 56.04952 * 8 7 4 30 30 H 1.09001 * 109.47471 * 300.00119 * 9 8 7 31 31 H 1.09001 * 109.47033 * 59.99870 * 9 8 7 32 32 H 0.96999 * 120.00108 * 179.97438 * 13 12 10 33 33 H 1.09004 * 115.54403 * 153.29223 * 18 2 1 34 34 H 1.08999 * 117.49494 * 0.02562 * 19 18 2 35 35 H 1.08995 * 117.49583 * 145.02218 * 19 18 2 36 36 H 1.09003 * 117.49816 * 252.50742 * 20 19 18 37 37 H 1.09003 * 117.50019 * 107.49430 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4461 1.3607 0.4864 5 1 4.0290 0.6712 -0.1242 6 8 3.4877 0.9401 1.8514 7 6 4.0339 2.7684 0.3684 8 7 5.4594 2.7349 0.7214 9 6 6.0588 4.0722 0.6187 10 6 7.5180 3.9984 0.9880 11 1 7.9564 3.0526 1.2705 12 6 8.2935 5.1381 0.9644 13 7 7.7598 6.2897 0.6200 14 14 10.1025 5.0466 1.4216 15 1 10.4553 3.6462 1.7676 16 1 10.9271 5.4944 0.2706 17 1 10.3630 5.9262 2.5892 18 6 1.9954 -0.7660 -1.1376 19 6 0.9926 -1.2552 -2.1845 20 6 1.6351 -2.2509 -1.2167 21 1 -0.3634 -1.0274 -0.0189 22 1 -0.3633 0.4974 0.8992 23 1 -0.3633 0.5301 -0.8803 24 1 1.9543 1.7764 -1.0110 25 1 1.3940 1.9915 0.6647 26 1 2.9891 1.5090 2.4537 27 1 3.9214 3.1244 -0.6557 28 1 3.5074 3.4400 1.0464 29 1 5.9583 2.0705 0.1488 30 1 5.9604 4.4369 -0.4038 31 1 5.5463 4.7532 1.2981 32 1 8.3053 7.0916 0.6037 33 1 2.9840 -0.4686 -1.4874 34 1 -0.0576 -1.0083 -2.0294 35 1 1.3214 -1.2796 -3.2234 36 1 2.3866 -2.9304 -1.6189 37 1 1.0075 -2.6594 -0.4247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:48 Heat of formation + Delta-G solvation = -43.757788 kcal Electronic energy + Delta-G solvation = -15846.044873 eV Core-core repulsion = 13237.152275 eV Total energy + Delta-G solvation = -2608.892598 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14534 -38.44535 -36.38992 -34.59055 -34.40303 -31.13804 -28.85993 -26.89760 -25.05798 -23.34285 -23.22361 -22.67112 -20.82909 -18.69795 -17.82526 -17.18078 -16.90013 -16.65770 -16.26691 -15.62293 -15.27833 -14.95925 -14.52807 -14.41384 -13.84925 -13.47642 -13.40667 -12.95162 -12.83481 -12.79750 -12.61582 -12.55463 -12.19935 -12.06563 -11.78554 -11.61983 -11.39029 -11.26591 -10.69847 -10.64654 -9.10286 -9.03122 -8.23936 -6.34992 1.40966 1.41881 1.56233 2.39669 2.64812 3.03464 3.09449 3.47224 3.68995 3.91492 3.93841 4.08493 4.09794 4.25230 4.30816 4.33634 4.50891 4.58743 4.70992 4.74474 4.76687 4.89251 4.94354 5.05743 5.10541 5.15116 5.23823 5.24544 5.60535 6.00091 6.07941 6.08853 6.42755 6.69749 6.86238 7.04971 7.36220 8.87921 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.052291 B = 0.004245 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.334875 B = 6594.195512 C = 6716.067333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.514 5.514 3 C 0.033 3.967 4 C 0.134 3.866 5 H 0.083 0.917 6 O -0.555 6.555 7 C 0.029 3.971 8 N -0.682 5.682 9 C 0.207 3.793 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.000 4.000 19 C -0.208 4.208 20 C -0.168 4.168 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.378 0.622 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.332 0.668 30 H -0.039 1.039 31 H 0.001 0.999 32 H 0.266 0.734 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 -12.932 -4.260 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.235 5.235 3 C -0.095 4.095 4 C 0.073 3.927 5 H 0.101 0.899 6 O -0.360 6.360 7 C -0.101 4.101 8 N -0.312 5.312 9 C 0.080 3.920 10 C -0.575 4.575 11 H 0.080 0.920 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.798 3.202 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.110 4.110 19 C -0.247 4.247 20 C -0.206 4.206 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.226 0.774 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.149 0.851 30 H -0.021 1.021 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.880 -13.384 -3.399 20.300 hybrid contribution 0.326 1.409 -1.385 2.003 sum -14.554 -11.976 -4.784 19.445 Atomic orbital electron populations 1.22542 0.86224 1.02618 1.01310 1.61742 1.08481 1.12943 1.40377 1.22726 0.96080 0.89667 1.01066 1.21677 0.94144 0.92879 0.83973 0.89883 1.86570 1.76492 1.55653 1.17328 1.22679 0.90543 0.98241 0.98647 1.60458 1.01928 1.09134 1.59700 1.19233 0.94035 0.86150 0.92615 1.21581 0.95198 0.95015 1.45681 0.91972 1.25952 1.04015 0.94738 0.94942 1.70088 1.38201 0.99805 1.49359 0.85267 0.78432 0.78547 0.77946 1.18809 1.20135 1.20249 1.22752 0.98707 0.96479 0.93013 1.23593 0.99564 1.05036 0.96531 1.23076 1.03745 0.91918 1.01825 0.90624 0.90627 0.94638 0.93206 0.89139 0.77391 0.95488 0.91422 0.85104 1.02134 0.98103 0.92556 0.87388 0.87625 0.88200 0.87870 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.14 127.69 1.04 1.38 16 2 N -0.51 -11.12 4.85 -897.06 -4.35 -15.46 16 3 C 0.03 0.74 4.60 86.30 0.40 1.14 16 4 C 0.13 3.81 3.23 30.60 0.10 3.91 16 5 H 0.08 2.51 6.94 -2.39 -0.02 2.49 16 6 O -0.56 -17.42 13.23 -148.98 -1.97 -19.39 16 7 C 0.03 1.02 5.32 86.30 0.46 1.48 16 8 N -0.68 -30.31 6.44 -517.92 -3.34 -33.64 16 9 C 0.21 11.37 5.44 85.56 0.47 11.84 16 10 C -0.54 -31.42 9.32 25.60 0.24 -31.18 16 11 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 14 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 C 0.00 0.00 5.75 44.92 0.26 0.25 16 19 C -0.21 -3.36 9.51 30.59 0.29 -3.06 16 20 C -0.17 -2.94 9.98 30.59 0.31 -2.64 16 21 H 0.08 1.14 6.55 -2.39 -0.02 1.12 16 22 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 23 H 0.04 0.54 7.31 -2.39 -0.02 0.52 16 24 H 0.05 1.08 8.00 -2.39 -0.02 1.06 16 25 H 0.09 1.79 7.90 -2.39 -0.02 1.77 16 26 H 0.38 9.56 9.05 -74.06 -0.67 8.89 16 27 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.33 14.28 8.72 -89.69 -0.78 13.50 16 30 H -0.04 -2.27 8.14 -2.39 -0.02 -2.29 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.11 2.39 7.00 -2.38 -0.02 2.38 16 34 H 0.11 1.53 5.90 -2.39 -0.01 1.52 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.67 7.57 -2.39 -0.02 1.65 16 Total: -1.00 -67.22 303.42 -3.73 -70.95 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.40 Total: 23.59 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.02 Total: -16.32 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -7.40 Total: -105.79 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.97 Total: -19.39 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.22 -3.73 -70.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.189 kcal (2) G-P(sol) polarization free energy of solvation -67.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds