Wall clock time and date at job start Thu Apr 9 2020 12:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 5 5 H 1.07998 * 120.00571 * 119.99773 * 4 2 1 6 6 C 1.37887 * 119.99671 * 299.99295 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46900 * 60.00587 * 8 6 4 10 10 H 1.48502 * 109.46875 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47434 * 300.00605 * 8 6 4 12 12 O 1.45201 * 109.46934 * 239.99568 * 2 1 3 13 13 C 1.34222 * 117.00137 * 90.00375 * 12 2 1 14 14 O 1.20833 * 119.99852 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00432 * 179.71953 * 13 12 2 16 16 H 1.09006 * 115.54585 * 34.69716 * 15 13 12 17 17 C 1.53002 * 117.50414 * 249.02643 * 15 13 12 18 18 C 1.52997 * 117.50207 * 180.36312 * 15 13 12 19 19 H 1.08998 * 117.49928 * 0.02562 * 18 15 13 20 20 N 1.46505 * 117.49781 * 214.98286 * 18 15 13 21 21 O 1.21802 * 119.99655 * 120.00283 * 20 18 15 22 22 O 1.21793 * 120.00111 * 299.99638 * 20 18 15 23 23 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 25 25 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 26 26 H 0.96993 * 119.99970 * 179.97438 * 7 6 4 27 27 H 1.08995 * 117.49660 * 359.97438 * 17 15 13 28 28 H 1.08997 * 117.49791 * 145.01695 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.8061 -1.1210 4.0083 10 1 1.8268 -0.4197 5.2205 11 1 1.8255 -2.5201 4.0079 12 8 2.0139 -0.6846 -1.1855 13 6 2.2171 0.0638 -2.2811 14 8 1.9983 1.2517 -2.2504 15 6 2.7247 -0.5763 -3.5474 16 1 2.3720 -1.5904 -3.7356 17 6 4.1460 -0.2284 -3.9944 18 6 2.9440 0.3316 -4.7592 19 1 2.7216 1.3920 -4.6403 20 7 2.6644 -0.2287 -6.0836 21 8 1.8214 0.2855 -6.7968 22 8 3.2750 -1.2085 -6.4717 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7082 1.1610 3.4843 27 1 4.7138 0.4639 -3.3727 28 1 4.7282 -1.0134 -4.4769 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842309771.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:03 Heat of formation + Delta-G solvation = -71.900802 kcal Electronic energy + Delta-G solvation = -15650.022304 eV Core-core repulsion = 12670.524483 eV Total energy + Delta-G solvation = -2979.497822 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.42511 -40.13159 -37.49873 -36.51968 -35.68629 -33.43869 -29.88061 -28.08178 -25.53876 -25.09184 -22.44843 -21.54325 -19.96218 -19.17631 -18.54116 -17.65221 -17.09167 -16.72235 -15.83568 -15.46667 -14.77362 -13.93236 -13.51905 -12.83993 -12.50583 -12.06215 -11.83725 -11.62154 -11.56743 -11.38347 -11.21034 -11.19822 -11.10109 -10.97795 -10.56088 -10.42261 -10.10334 -9.79101 -9.11166 -8.63483 -6.32071 -4.40430 0.31255 1.37408 2.20567 2.90317 3.13542 3.18189 3.22571 3.26863 3.61326 3.94779 4.19604 4.39764 4.93468 5.01057 5.14506 5.19693 5.42024 6.18495 6.42158 6.70103 6.71415 6.89188 7.39029 7.49669 7.53819 7.70806 7.94776 8.29233 8.67817 9.25583 10.75284 Molecular weight = 229.08amu Principal moments of inertia in cm(-1) A = 0.058533 B = 0.005397 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.247579 B = 5186.347014 C = 5415.908848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.050 0.950 4 C -0.527 4.527 5 H 0.070 0.930 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.915 3.085 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 O -0.342 6.342 13 C 0.484 3.516 14 O -0.510 6.510 15 C -0.116 4.116 16 H 0.154 0.846 17 C -0.104 4.104 18 C -0.069 4.069 19 H 0.187 0.813 20 N 0.013 4.987 21 O -0.154 6.154 22 O -0.162 6.162 23 H 0.039 0.961 24 H 0.103 0.897 25 H 0.017 0.983 26 H 0.269 0.731 27 H 0.137 0.863 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -2.180 -10.032 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.565 4.565 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.742 3.258 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.198 1.198 12 O -0.257 6.257 13 C 0.325 3.675 14 O -0.400 6.400 15 C -0.136 4.136 16 H 0.171 0.829 17 C -0.142 4.142 18 C -0.168 4.168 19 H 0.204 0.796 20 N 0.535 4.465 21 O -0.373 6.373 22 O -0.379 6.379 23 H 0.058 0.942 24 H 0.121 0.879 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.155 0.845 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.779 -1.414 -9.108 10.383 hybrid contribution -0.031 -0.307 0.568 0.646 sum 4.748 -1.721 -8.540 9.922 Atomic orbital electron populations 1.22199 0.97195 1.00427 1.01667 1.20815 0.91647 0.93980 0.77124 0.93273 1.20961 1.33075 1.13766 0.88655 0.91152 1.24900 0.94775 0.95057 0.99143 1.69874 1.35655 1.22426 1.24584 0.86275 0.79229 0.79560 0.80758 1.19896 1.20927 1.19816 1.86489 1.75050 1.43324 1.20864 1.21687 0.75295 0.85337 0.85178 1.90662 1.48553 1.16423 1.84405 1.22255 1.01943 1.00186 0.89229 0.82879 1.23710 0.89239 1.03355 0.97850 1.25135 1.10222 1.01895 0.79529 0.79596 1.43775 0.99122 0.99985 1.03632 1.94580 1.26284 1.62253 1.54166 1.94532 1.49302 1.16088 1.78027 0.94165 0.87906 0.96424 0.92126 0.84525 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.32 37.16 0.35 -3.49 15 2 C 0.22 5.52 2.56 -27.88 -0.07 5.45 15 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 15 4 C -0.53 -14.16 8.90 -34.43 -0.31 -14.47 15 5 H 0.07 1.85 7.81 -52.49 -0.41 1.44 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 15 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 15 8 Si 0.92 20.32 29.54 -169.99 -5.02 15.30 15 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 12 O -0.34 -7.56 9.86 -39.24 -0.39 -7.95 15 13 C 0.48 9.06 7.71 36.00 0.28 9.34 15 14 O -0.51 -10.82 15.48 -18.76 -0.29 -11.11 15 15 C -0.12 -1.53 6.19 -91.77 -0.57 -2.10 15 16 H 0.15 1.80 8.14 -51.93 -0.42 1.38 15 17 C -0.10 -1.03 9.72 -26.69 -0.26 -1.29 15 18 C -0.07 -0.83 6.43 -67.89 -0.44 -1.26 15 19 H 0.19 2.22 7.67 -51.93 -0.40 1.82 15 20 N 0.01 0.18 4.33 -4.86 -0.02 0.16 15 21 O -0.15 -2.29 19.24 -29.46 -0.57 -2.86 15 22 O -0.16 -2.19 18.28 -29.46 -0.54 -2.73 15 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.10 2.69 6.07 -51.93 -0.32 2.37 15 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 26 H 0.27 6.96 8.31 -40.82 -0.34 6.63 15 27 H 0.14 1.22 8.14 -51.93 -0.42 0.79 15 28 H 0.14 1.11 7.63 -51.93 -0.40 0.71 15 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -29.47 262.72 -6.07 -35.54 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -2.72 Total: -0.35 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.11 Total: -6.22 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.61 Total: -23.59 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.78 Total: -24.64 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.47 -6.07 -35.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842309771.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.362 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds