Wall clock time and date at job start Thu Apr 9 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47315 * 2 1 4 4 N 1.31581 * 122.08073 * 269.97503 * 3 2 1 5 5 C 1.30142 * 116.99170 * 180.02562 * 4 3 2 6 6 S 1.76200 * 125.46728 * 180.02562 * 5 4 3 7 7 C 1.76198 * 100.00238 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99822 * 359.97438 * 7 6 5 9 9 C 1.38642 * 120.00212 * 179.97438 * 7 6 5 10 10 N 1.31655 * 119.99736 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00189 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46846 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46922 * 119.99957 * 11 9 7 14 14 H 1.48498 * 109.47286 * 240.00368 * 11 9 7 15 15 S 1.76171 * 109.06833 * 359.73425 * 5 4 3 16 16 C 1.33554 * 122.08427 * 90.00229 * 3 2 1 17 17 C 1.50703 * 125.87512 * 359.97438 * 16 3 2 18 18 H 1.08999 * 109.47156 * 300.00141 * 1 2 3 19 19 H 1.09005 * 109.46963 * 59.99690 * 1 2 3 20 20 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47156 * 239.99859 * 2 1 3 22 22 H 1.09002 * 109.47289 * 119.99917 * 2 1 3 23 23 H 0.96996 * 119.99772 * 180.02562 * 10 9 7 24 24 H 1.09002 * 109.47152 * 90.00209 * 17 16 3 25 25 H 1.09001 * 109.46980 * 330.00310 * 17 16 3 26 26 H 1.09004 * 109.47113 * 210.00290 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2658 2.0795 -1.1149 5 6 2.6984 3.3015 -0.9994 6 16 3.0803 4.3816 -2.3382 7 6 3.5861 5.8122 -1.4425 8 1 3.5822 5.8025 -0.3625 9 6 3.9891 6.9503 -2.1240 10 7 3.9934 6.9622 -3.4405 11 14 4.5247 8.4671 -1.1744 12 1 4.4289 8.1981 0.2830 13 1 5.9288 8.8002 -1.5246 14 1 3.6425 9.6086 -1.5265 15 16 2.8328 3.7054 0.7101 16 6 2.2689 2.0896 1.1316 17 6 2.0799 1.5566 2.5285 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 4.2757 7.7583 -3.9173 24 1 3.0031 1.0852 2.8655 25 1 1.2747 0.8219 2.5311 26 1 1.8251 2.3773 3.1991 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845323586.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:05 Heat of formation + Delta-G solvation = 11.712883 kcal Electronic energy + Delta-G solvation = -11368.649584 eV Core-core repulsion = 9278.283266 eV Total energy + Delta-G solvation = -2090.366318 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85830 -33.40308 -32.91185 -31.05979 -26.67107 -25.97735 -23.51919 -22.82180 -18.91609 -17.42657 -16.99619 -15.55427 -15.18192 -14.44394 -13.84605 -13.61805 -13.10665 -12.78026 -12.58009 -12.20258 -11.99024 -11.64507 -11.42930 -11.29998 -11.16134 -10.81793 -10.35599 -10.06635 -9.59594 -9.31017 -8.62226 -8.44510 -8.29161 -6.72179 -6.68043 -4.41095 1.44421 2.14588 2.55124 2.81983 3.03764 3.11866 3.21097 3.54469 3.91050 4.75216 4.94062 5.11462 5.31764 5.51291 5.58909 5.63528 5.76933 5.81807 6.03491 6.10678 6.16534 6.41955 6.56791 6.95946 7.25765 7.95836 8.57629 8.79645 10.37757 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.046823 B = 0.007685 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.854753 B = 3642.820028 C = 4136.131111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.089 3.911 4 N -0.503 5.503 5 C 0.063 3.937 6 S 0.187 5.813 7 C -0.565 4.565 8 H 0.093 0.907 9 C 0.086 3.914 10 N -0.858 5.858 11 Si 0.929 3.071 12 H -0.264 1.264 13 H -0.274 1.274 14 H -0.274 1.274 15 S 0.042 5.958 16 C -0.279 4.279 17 C -0.058 4.058 18 H 0.052 0.948 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.279 0.721 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -7.212 7.630 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.047 4.047 4 N -0.224 5.224 5 C -0.320 4.320 6 S 0.427 5.573 7 C -0.714 4.714 8 H 0.111 0.889 9 C -0.126 4.126 10 N -0.491 5.491 11 Si 0.754 3.246 12 H -0.188 1.188 13 H -0.199 1.199 14 H -0.199 1.199 15 S 0.293 5.707 16 C -0.407 4.407 17 C -0.117 4.117 18 H 0.071 0.929 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.857 -6.441 6.174 9.368 hybrid contribution 0.148 0.361 1.843 1.884 sum -2.709 -6.080 8.017 10.420 Atomic orbital electron populations 1.21685 0.94961 1.01070 1.02280 1.20059 0.95747 0.90535 1.02385 1.19888 1.00559 0.97464 0.86765 1.66497 1.21132 1.05465 1.29325 1.30615 1.02793 0.98699 0.99862 1.83536 1.70986 1.02657 1.00137 1.23340 1.52883 0.98901 0.96293 0.88899 1.25048 0.93455 0.98911 0.95232 1.69958 1.42300 1.30350 1.06459 0.85920 0.78621 0.80053 0.80046 1.18814 1.19913 1.19910 1.84951 1.66910 1.13324 1.05539 1.25067 1.17442 0.98553 0.99599 1.19986 1.01334 1.00031 0.90328 0.92890 0.92319 0.92665 0.90725 0.91080 0.91105 0.92048 0.91441 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 37.15 0.37 -1.49 15 2 C -0.05 -0.70 5.81 -27.88 -0.16 -0.86 15 3 C 0.09 1.72 5.94 -84.34 -0.50 1.22 15 4 N -0.50 -11.40 10.57 -9.65 -0.10 -11.50 15 5 C 0.06 1.49 7.80 52.05 0.41 1.90 15 6 S 0.19 4.79 21.89 -107.50 -2.35 2.44 15 7 C -0.56 -14.98 9.26 30.88 0.29 -14.70 15 8 H 0.09 2.41 5.93 -52.48 -0.31 2.10 15 9 C 0.09 2.23 5.49 -17.48 -0.10 2.13 15 10 N -0.86 -23.15 13.22 55.48 0.73 -22.41 15 11 Si 0.93 19.91 29.55 -169.99 -5.02 14.88 15 12 H -0.26 -5.60 7.11 56.52 0.40 -5.19 15 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 14 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 15 S 0.04 0.90 21.17 -107.50 -2.28 -1.38 15 16 C -0.28 -5.16 6.57 -35.95 -0.24 -5.40 15 17 C -0.06 -0.79 9.77 36.01 0.35 -0.44 15 18 H 0.05 0.67 7.91 -51.93 -0.41 0.26 15 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.07 0.89 7.26 -51.93 -0.38 0.51 15 23 H 0.28 6.92 8.31 -40.82 -0.34 6.58 15 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.07 0.80 7.13 -51.93 -0.37 0.43 15 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 LS Contribution 255.52 15.07 3.85 3.85 Total: -1.00 -28.29 255.52 -7.47 -35.76 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -2.72 Total: -4.01 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 0.42 Total: -17.63 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.63 Total: -33.91 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -4.63 Total: 1.06 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.29 -7.47 -35.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845323586.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.472 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds