Wall clock time and date at job start Thu Apr 9 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47315 * 2 1 4 4 N 1.31581 * 122.08073 * 269.97503 * 3 2 1 5 5 C 1.30142 * 116.99170 * 180.02562 * 4 3 2 6 6 S 1.76200 * 125.46728 * 180.02562 * 5 4 3 7 7 C 1.76198 * 100.00238 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99822 * 359.97438 * 7 6 5 9 9 C 1.38642 * 120.00212 * 179.97438 * 7 6 5 10 10 N 1.31655 * 119.99736 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00189 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46846 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46922 * 119.99957 * 11 9 7 14 14 H 1.48498 * 109.47286 * 240.00368 * 11 9 7 15 15 S 1.76171 * 109.06833 * 359.73425 * 5 4 3 16 16 C 1.33554 * 122.08427 * 90.00229 * 3 2 1 17 17 C 1.50703 * 125.87512 * 359.97438 * 16 3 2 18 18 H 1.08999 * 109.47156 * 300.00141 * 1 2 3 19 19 H 1.09005 * 109.46963 * 59.99690 * 1 2 3 20 20 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47156 * 239.99859 * 2 1 3 22 22 H 1.09002 * 109.47289 * 119.99917 * 2 1 3 23 23 H 0.96996 * 119.99772 * 180.02562 * 10 9 7 24 24 H 1.09002 * 109.47152 * 90.00209 * 17 16 3 25 25 H 1.09001 * 109.46980 * 330.00310 * 17 16 3 26 26 H 1.09004 * 109.47113 * 210.00290 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2658 2.0795 -1.1149 5 6 2.6984 3.3015 -0.9994 6 16 3.0803 4.3816 -2.3382 7 6 3.5861 5.8122 -1.4425 8 1 3.5822 5.8025 -0.3625 9 6 3.9891 6.9503 -2.1240 10 7 3.9934 6.9622 -3.4405 11 14 4.5247 8.4671 -1.1744 12 1 4.4289 8.1981 0.2830 13 1 5.9288 8.8002 -1.5246 14 1 3.6425 9.6086 -1.5265 15 16 2.8328 3.7054 0.7101 16 6 2.2689 2.0896 1.1316 17 6 2.0799 1.5566 2.5285 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 4.2757 7.7583 -3.9173 24 1 3.0031 1.0852 2.8655 25 1 1.2747 0.8219 2.5311 26 1 1.8251 2.3773 3.1991 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845323586.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:05 Heat of formation + Delta-G solvation = -5.425780 kcal Electronic energy + Delta-G solvation = -11369.392772 eV Core-core repulsion = 9278.283266 eV Total energy + Delta-G solvation = -2091.109506 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47448 -34.88789 -34.74765 -32.29784 -28.32219 -27.71601 -25.02922 -24.16466 -20.64080 -19.06078 -18.70277 -17.26106 -17.03747 -15.90887 -15.36915 -14.91024 -14.68980 -14.24576 -13.77830 -13.50650 -13.37181 -13.24993 -13.04632 -12.94985 -12.63547 -12.08626 -11.91108 -11.55554 -11.42205 -11.14264 -10.26475 -10.24759 -10.02822 -8.60130 -8.57524 -6.40975 -0.21638 0.42433 0.82750 1.10626 1.37189 1.38980 1.53947 1.92565 2.13116 2.80723 3.05007 3.69689 4.13768 4.20852 4.46904 4.50830 4.62940 4.77492 4.94475 5.02892 5.07398 5.22473 5.27901 5.34853 5.55733 5.99593 6.82537 6.90601 8.48396 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.046823 B = 0.007685 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.854753 B = 3642.820028 C = 4136.131111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C 0.058 3.942 4 N -0.509 5.509 5 C 0.039 3.961 6 S 0.116 5.884 7 C -0.578 4.578 8 H 0.092 0.908 9 C 0.037 3.963 10 N -0.895 5.895 11 Si 0.997 3.003 12 H -0.261 1.261 13 H -0.265 1.265 14 H -0.265 1.265 15 S 0.035 5.965 16 C -0.247 4.247 17 C -0.061 4.061 18 H 0.059 0.941 19 H 0.033 0.967 20 H 0.087 0.913 21 H 0.070 0.930 22 H 0.104 0.896 23 H 0.284 0.716 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -8.438 10.435 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.076 4.076 4 N -0.230 5.230 5 C -0.345 4.345 6 S 0.353 5.647 7 C -0.726 4.726 8 H 0.110 0.890 9 C -0.171 4.171 10 N -0.529 5.529 11 Si 0.817 3.183 12 H -0.184 1.184 13 H -0.189 1.189 14 H -0.189 1.189 15 S 0.286 5.714 16 C -0.374 4.374 17 C -0.120 4.120 18 H 0.078 0.922 19 H 0.052 0.948 20 H 0.106 0.894 21 H 0.089 0.911 22 H 0.122 0.878 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.314 -7.715 8.999 12.308 hybrid contribution 0.197 0.486 1.148 1.262 sum -3.117 -7.229 10.147 12.843 Atomic orbital electron populations 1.21669 0.93552 1.02930 1.01392 1.20236 0.96832 0.87515 1.03842 1.20641 1.01407 0.99595 0.85959 1.66518 1.19639 1.05231 1.31602 1.30258 1.04861 0.99036 1.00329 1.83516 1.74148 1.04376 1.02647 1.23511 1.53610 0.99274 0.96253 0.88972 1.26020 0.93218 1.01713 0.96130 1.70055 1.43430 1.31432 1.07943 0.84925 0.78592 0.76171 0.78583 1.18438 1.18937 1.18938 1.84912 1.66629 1.15854 1.04049 1.25829 1.13394 0.96183 1.01945 1.20262 1.03611 1.01189 0.86977 0.92222 0.94777 0.89447 0.91129 0.87795 0.90645 0.89763 0.88433 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.89 71.98 0.71 -2.42 15 2 C -0.04 -1.16 5.81 29.85 0.17 -0.99 15 3 C 0.06 2.12 5.94 41.54 0.25 2.36 15 4 N -0.51 -23.11 10.57 -184.44 -1.95 -25.06 15 5 C 0.04 1.88 7.80 130.49 1.02 2.90 15 6 S 0.12 6.22 21.89 -56.49 -1.24 4.98 15 7 C -0.58 -31.64 9.26 67.92 0.63 -31.02 15 8 H 0.09 4.89 5.93 -2.91 -0.02 4.87 15 9 C 0.04 1.98 5.49 84.82 0.47 2.44 15 10 N -0.89 -49.78 13.22 21.62 0.29 -49.50 15 11 Si 1.00 41.01 29.55 68.60 2.03 43.03 15 12 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 13 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 14 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 15 S 0.04 1.48 21.17 -56.49 -1.20 0.29 15 16 C -0.25 -8.41 6.57 24.62 0.16 -8.25 15 17 C -0.06 -1.38 9.77 71.24 0.70 -0.68 15 18 H 0.06 1.27 7.91 -2.39 -0.02 1.25 15 19 H 0.03 0.93 8.14 -2.38 -0.02 0.91 15 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.10 2.06 7.26 -2.39 -0.02 2.04 15 23 H 0.28 14.45 8.31 -92.71 -0.77 13.68 15 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.10 1.71 7.13 -2.39 -0.02 1.69 15 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 15 Total: -1.00 -63.34 255.52 3.22 -60.12 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.18 Total: 1.78 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 4.10 Total: -35.65 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.66 Total: -74.56 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 7.70 SS G_CDS: -2.43 Total: 5.27 kcal Total: -63.34 3.22 -60.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845323586.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.696 kcal (2) G-P(sol) polarization free energy of solvation -63.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds