Wall clock time and date at job start Thu Apr 9 2020 12:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99958 * 2 1 4 4 C 1.52997 * 109.46948 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47075 * 65.00615 * 4 3 2 6 6 C 1.36932 * 119.99968 * 264.42924 * 5 4 3 7 7 H 1.08009 * 120.00387 * 146.17587 * 6 5 4 8 8 C 1.38813 * 120.00144 * 326.17580 * 6 5 4 9 9 N 1.31620 * 119.99959 * 337.62658 * 8 6 5 10 10 Si 1.86808 * 120.00137 * 157.61444 * 8 6 5 11 11 H 1.48497 * 109.46950 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46741 * 120.00300 * 10 8 6 13 13 H 1.48492 * 109.47094 * 240.00400 * 10 8 6 14 14 C 1.46503 * 120.00046 * 84.42656 * 5 4 3 15 15 N 1.46499 * 109.47070 * 90.00631 * 14 5 4 16 16 C 1.47387 * 132.38414 * 89.99681 * 15 14 5 17 17 C 1.53727 * 86.50396 * 179.97438 * 16 15 14 18 18 C 1.35839 * 132.37575 * 269.93804 * 15 14 5 19 19 O 1.21279 * 134.17695 * 0.02562 * 18 15 14 20 20 H 1.08995 * 109.46923 * 299.99728 * 1 2 3 21 21 H 1.09002 * 109.47334 * 59.99666 * 1 2 3 22 22 H 1.08992 * 109.47049 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46893 * 60.00424 * 3 2 1 24 24 H 1.08996 * 109.47387 * 300.00761 * 3 2 1 25 25 H 1.08995 * 109.47828 * 305.00360 * 4 3 2 26 26 H 1.09006 * 109.47037 * 185.00095 * 4 3 2 27 27 H 0.97005 * 119.99969 * 179.97438 * 9 8 6 28 28 H 1.08991 * 109.47392 * 330.00292 * 14 5 4 29 29 H 1.09002 * 109.47114 * 209.99712 * 14 5 4 30 30 H 1.08998 * 113.70695 * 65.55500 * 16 15 14 31 31 H 1.09004 * 113.70514 * 294.35647 * 16 15 14 32 32 H 1.09000 * 113.69358 * 114.42729 * 17 16 15 33 33 H 1.09005 * 113.68834 * 245.47482 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2076 -0.7847 -1.3022 7 1 3.9969 -1.3347 -2.2075 8 6 4.7126 -1.4451 -0.1905 9 7 5.3722 -0.7745 0.7301 10 14 4.4557 -3.2857 -0.0010 11 1 3.6889 -3.8008 -1.1637 12 1 5.7745 -3.9656 0.0622 13 1 3.7001 -3.5539 1.2489 14 6 4.1707 1.3864 -2.4477 15 7 5.5522 1.8723 -2.4876 16 6 6.7843 1.3165 -3.0751 17 6 7.4941 2.5693 -2.5366 18 6 6.1432 2.9926 -1.9967 19 8 5.7460 3.9534 -1.3723 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6887 1.8463 0.8901 24 1 1.6886 1.8464 -0.8899 25 1 3.8509 0.5684 0.8426 26 1 3.9785 2.1765 0.0902 27 1 5.7247 -1.2360 1.5071 28 1 3.4877 2.2353 -2.4199 29 1 3.9705 0.7878 -3.3363 30 1 6.7633 1.2580 -4.1633 31 1 7.1146 0.3900 -2.6052 32 1 8.2292 2.3567 -1.7604 33 1 7.8797 3.2241 -3.3181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857235569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:35 Heat of formation + Delta-G solvation = -21.687776 kcal Electronic energy + Delta-G solvation = -16648.401945 eV Core-core repulsion = 13904.633280 eV Total energy + Delta-G solvation = -2743.768665 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.55866 -37.20495 -35.81943 -35.00350 -31.51570 -29.71230 -27.92341 -25.68203 -24.66227 -23.86222 -22.83003 -20.43216 -17.86935 -16.84575 -16.00514 -15.88315 -15.68075 -15.41995 -15.03436 -14.51891 -13.99283 -13.50474 -13.35533 -12.55823 -12.47444 -11.79080 -11.64340 -11.34226 -11.24105 -11.13409 -10.86286 -10.82173 -10.66340 -10.20796 -10.04278 -9.73955 -9.21158 -8.87181 -8.50686 -7.99480 -6.76966 -5.79731 -3.33696 3.22781 3.39100 3.48328 3.51006 3.92095 4.51092 4.66335 4.68646 5.21581 5.35314 5.47653 5.52755 5.74793 5.78645 5.87755 5.98658 6.05101 6.09477 6.13885 6.23552 6.30037 6.52870 6.61992 6.82956 7.42895 7.50534 7.68012 7.79852 8.03087 8.48247 9.04394 9.13758 9.77471 10.30603 11.22272 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.011252 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.617254 B = 2487.912813 C = 3350.145700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.049 3.951 4 C 0.137 3.863 5 N -0.563 5.563 6 C -0.251 4.251 7 H 0.063 0.937 8 C 0.020 3.980 9 N -0.886 5.886 10 Si 0.900 3.100 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.288 1.288 14 C 0.352 3.648 15 N -0.623 5.623 16 C 0.107 3.893 17 C -0.184 4.184 18 C 0.520 3.480 19 O -0.535 6.535 20 H 0.027 0.973 21 H 0.029 0.971 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.254 0.746 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 2.842 -5.703 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C -0.030 4.030 4 C 0.011 3.989 5 N -0.283 5.283 6 C -0.381 4.381 7 H 0.080 0.920 8 C -0.181 4.181 9 N -0.528 5.528 10 Si 0.730 3.270 11 H -0.202 1.202 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.145 3.855 15 N -0.364 5.364 16 C -0.017 4.017 17 C -0.225 4.225 18 C 0.306 3.694 19 O -0.412 6.412 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.093 0.907 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.127 0.873 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.710 3.016 -5.217 6.264 hybrid contribution -0.393 -0.823 0.265 0.950 sum -2.104 2.193 -4.952 5.810 Atomic orbital electron populations 1.22635 0.84108 1.01499 0.98515 1.88190 1.16709 1.27835 1.94870 1.23361 0.98537 0.83987 0.97132 1.21118 0.87359 0.97446 0.93022 1.44506 1.72449 1.04529 1.06778 1.18979 1.36886 0.82379 0.99813 0.91976 1.25039 0.96392 0.97872 0.98769 1.70004 1.35234 1.35425 1.12145 0.86287 0.77155 0.85555 0.77975 1.20181 1.22083 1.21441 1.21309 0.80121 0.92431 0.91620 1.52874 1.09807 1.20081 1.53664 1.22732 0.83420 0.97503 0.98034 1.23935 0.98575 0.97962 1.01985 1.22084 0.87768 0.81813 0.77726 1.90634 1.77155 1.31571 1.41825 0.95446 0.95251 0.90674 0.95350 0.95460 0.87339 0.93807 0.93617 0.92466 0.91364 0.90814 0.89313 0.87878 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.94 10.44 -35.23 -0.37 -8.31 16 3 C 0.05 1.03 6.28 37.16 0.23 1.26 16 4 C 0.14 3.36 5.63 -4.04 -0.02 3.33 16 5 N -0.56 -13.81 2.65 -176.95 -0.47 -14.28 16 6 C -0.25 -6.65 9.28 -15.06 -0.14 -6.79 16 7 H 0.06 1.64 7.92 -52.48 -0.42 1.23 16 8 C 0.02 0.53 4.91 -17.43 -0.09 0.45 16 9 N -0.89 -25.30 11.34 55.49 0.63 -24.67 16 10 Si 0.90 21.79 29.61 -169.99 -5.03 16.75 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.35 7.38 7.30 -63.75 -0.47 6.91 16 15 N -0.62 -12.40 3.57 -182.33 -0.65 -13.05 16 16 C 0.11 1.70 9.19 -3.34 -0.03 1.67 16 17 C -0.18 -2.77 8.29 -27.14 -0.22 -2.99 16 18 C 0.52 10.64 9.65 -10.27 -0.10 10.55 16 19 O -0.54 -12.78 18.03 5.56 0.10 -12.68 16 20 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 25 H 0.11 3.03 5.34 -51.93 -0.28 2.75 16 26 H 0.04 1.10 8.11 -51.93 -0.42 0.68 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 29 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -31.96 287.54 -6.07 -38.03 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.89 Total: -2.13 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 0.28 Total: 15.99 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.49 Total: -51.99 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.27 Total: -20.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.96 -6.07 -38.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857235569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.346 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds