Wall clock time and date at job start Thu Apr 9 2020 11:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.51661 * 2 1 4 4 C 1.53247 * 109.49211 * 239.93880 * 2 1 3 5 5 N 1.47077 * 108.68473 * 186.11472 * 4 2 1 6 6 C 1.36935 * 120.87913 * 231.28171 * 5 4 2 7 7 H 1.08004 * 119.99872 * 28.14985 * 6 5 4 8 8 C 1.38813 * 120.00251 * 208.14445 * 6 5 4 9 9 N 1.31621 * 119.99523 * 18.13096 * 8 6 5 10 10 Si 1.86799 * 120.00336 * 198.12590 * 8 6 5 11 11 H 1.48502 * 109.46771 * 59.99913 * 10 8 6 12 12 H 1.48499 * 109.47165 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46912 * 300.00228 * 10 8 6 14 14 C 1.47468 * 117.98362 * 51.09802 * 5 4 2 15 15 C 1.53234 * 108.62840 * 308.92093 * 14 5 4 16 16 H 1.08997 * 109.50010 * 293.89843 * 15 14 5 17 17 C 1.53000 * 109.51974 * 173.82259 * 15 14 5 18 18 N 1.46900 * 109.33720 * 53.85461 * 15 14 5 19 19 C 1.46904 * 111.00138 * 172.74507 * 18 15 14 20 20 C 1.53002 * 109.47027 * 58.10814 * 19 18 15 21 21 O 1.42901 * 109.47245 * 67.24662 * 20 19 18 22 22 H 1.08996 * 109.47218 * 186.20385 * 1 2 3 23 23 H 1.09009 * 109.46852 * 306.19731 * 1 2 3 24 24 H 1.08993 * 109.47655 * 66.19686 * 1 2 3 25 25 H 1.09003 * 109.62358 * 305.92199 * 4 2 1 26 26 H 1.08996 * 109.62424 * 66.29943 * 4 2 1 27 27 H 0.96998 * 119.99815 * 180.02562 * 9 8 6 28 28 H 1.09006 * 109.55886 * 189.19493 * 14 5 4 29 29 H 1.09003 * 109.75290 * 68.77378 * 14 5 4 30 30 H 1.08997 * 109.47208 * 293.41516 * 17 15 14 31 31 H 1.09000 * 109.46514 * 53.40994 * 17 15 14 32 32 H 1.08998 * 109.47371 * 173.40713 * 17 15 14 33 33 H 1.09002 * 109.46943 * 178.10336 * 19 18 15 34 34 H 1.09002 * 109.47422 * 298.10552 * 19 18 15 35 35 H 1.09000 * 109.47110 * 187.24790 * 20 19 18 36 36 H 1.09002 * 109.46928 * 307.24903 * 20 19 18 37 37 H 0.96705 * 113.99768 * 184.80957 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2503 5 7 3.5045 -0.8430 -1.1603 6 6 4.3073 -0.4409 -2.1942 7 1 3.9794 0.3451 -2.8583 8 6 5.5427 -1.0434 -2.3886 9 7 5.8005 -2.2095 -1.8351 10 14 6.8391 -0.1995 -3.4356 11 1 7.1730 1.1200 -2.8417 12 1 8.0602 -1.0431 -3.4868 13 1 6.3145 -0.0047 -4.8112 14 6 4.0781 -1.4042 0.0769 15 6 3.4868 -0.6537 1.2749 16 1 3.8235 0.3828 1.2572 17 6 3.9486 -1.3186 2.5732 18 7 2.0203 -0.6939 1.1983 19 6 1.4142 -0.1361 2.4147 20 6 1.8941 1.3035 2.6096 21 8 1.3665 2.1268 1.5675 22 1 -0.3633 -1.0216 0.1111 23 1 -0.3633 0.6070 0.8294 24 1 -0.3634 0.4147 -0.9402 25 1 1.5956 -1.7168 -1.3065 26 1 1.7744 -0.1519 -2.1391 27 1 6.6638 -2.6303 -1.9706 28 1 5.1611 -1.2805 0.0658 29 1 3.8313 -2.4634 0.1501 30 1 3.5134 -2.3153 2.6457 31 1 5.0358 -1.3958 2.5750 32 1 3.6256 -0.7183 3.4237 33 1 0.3285 -0.1471 2.3175 34 1 1.7080 -0.7368 3.2755 35 1 1.5494 1.6739 3.5750 36 1 2.9834 1.3308 2.5778 37 1 1.6889 3.0384 1.5851 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307772925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:10 Heat of formation + Delta-G solvation = -39.397376 kcal Electronic energy + Delta-G solvation = -17549.918808 eV Core-core repulsion = 14941.215292 eV Total energy + Delta-G solvation = -2608.703516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.63658 -37.61128 -35.95121 -34.47785 -33.18410 -30.72687 -28.57321 -27.33775 -27.28245 -24.44519 -22.49216 -21.95294 -20.03041 -18.68098 -18.42274 -17.20529 -16.67066 -16.52348 -15.60841 -15.56006 -14.94889 -14.64544 -14.32707 -13.88744 -13.71442 -13.38960 -13.02313 -12.96328 -12.86249 -12.67521 -12.46727 -12.34660 -12.25494 -12.11809 -11.86610 -11.72482 -11.36215 -11.23479 -10.61779 -10.57846 -9.02769 -8.61435 -7.88235 -5.33713 1.44320 1.46727 1.54211 2.49642 3.05007 3.25069 3.52516 3.68956 4.11299 4.18039 4.31965 4.35079 4.44878 4.53940 4.57522 4.64046 4.68785 4.84953 4.87445 4.93808 4.96904 5.10744 5.12353 5.14669 5.32592 5.35355 5.42353 5.55087 5.61487 5.72093 6.33158 6.43003 6.47023 6.89239 7.12093 7.82705 8.40373 9.18186 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.008876 C = 0.008303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.793043 B = 3153.785998 C = 3371.324818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.078 3.922 3 H 0.054 0.946 4 C 0.147 3.853 5 N -0.614 5.614 6 C -0.268 4.268 7 H 0.062 0.938 8 C -0.049 4.049 9 N -0.933 5.933 10 Si 0.969 3.031 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.275 1.275 14 C 0.196 3.804 15 C 0.070 3.930 16 H 0.023 0.977 17 C -0.133 4.133 18 N -0.531 5.531 19 C 0.044 3.956 20 C 0.041 3.959 21 O -0.577 6.577 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.005 0.995 26 H 0.048 0.952 27 H 0.251 0.749 28 H 0.047 0.953 29 H -0.006 1.006 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 7.104 10.767 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.031 4.031 3 H 0.072 0.928 4 C 0.022 3.978 5 N -0.338 5.338 6 C -0.398 4.398 7 H 0.080 0.920 8 C -0.245 4.245 9 N -0.579 5.579 10 Si 0.796 3.204 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.201 1.201 14 C 0.070 3.930 15 C -0.040 4.040 16 H 0.041 0.959 17 C -0.191 4.191 18 N -0.256 5.256 19 C -0.084 4.084 20 C -0.038 4.038 21 O -0.384 6.384 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.012 0.988 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.100 5.952 10.526 14.555 hybrid contribution 1.519 1.307 -0.635 2.102 sum -6.581 7.259 9.891 13.923 Atomic orbital electron populations 1.21679 0.93200 1.01286 1.02001 1.22063 0.95645 0.95924 0.89517 0.92838 1.21227 0.83980 0.96449 0.96187 1.44466 1.01020 1.73960 1.14321 1.19447 0.99378 1.13059 1.07953 0.92000 1.25838 1.01860 0.95797 1.00980 1.70208 1.22835 1.15375 1.49479 0.85330 0.78398 0.77809 0.78845 1.20369 1.21694 1.20078 1.20645 0.96093 0.92799 0.83424 1.22118 0.87988 0.97250 0.96617 0.95944 1.21776 1.00822 1.01126 0.95388 1.62124 1.05795 1.55090 1.02583 1.22559 1.00815 0.91561 0.93437 1.22944 0.97292 0.92749 0.90818 1.86601 1.72532 1.26268 1.53016 0.93066 0.91082 0.92456 0.97746 0.93343 0.94018 0.93432 0.98806 0.92118 0.92684 0.90510 0.89431 0.88045 0.91365 0.94537 0.76688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 8.28 71.98 0.60 -3.17 16 2 C 0.08 2.94 1.93 45.00 0.09 3.02 16 3 H 0.05 2.16 5.78 -2.39 -0.01 2.15 16 4 C 0.15 6.88 5.96 86.35 0.51 7.39 16 5 N -0.61 -33.47 3.04 -697.12 -2.12 -35.59 16 6 C -0.27 -15.65 9.61 84.03 0.81 -14.84 16 7 H 0.06 3.53 7.89 -2.91 -0.02 3.51 16 8 C -0.05 -2.85 4.90 84.86 0.42 -2.44 16 9 N -0.93 -57.24 11.38 21.65 0.25 -56.99 16 10 Si 0.97 46.15 29.59 68.60 2.03 48.18 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.20 10.10 4.72 86.27 0.41 10.50 16 15 C 0.07 2.76 1.97 44.99 0.09 2.85 16 16 H 0.02 0.94 6.54 -2.39 -0.02 0.93 16 17 C -0.13 -4.15 8.41 71.98 0.61 -3.54 16 18 N -0.53 -18.95 4.52 -844.95 -3.82 -22.77 16 19 C 0.04 1.16 5.02 86.30 0.43 1.59 16 20 C 0.04 0.96 6.64 71.98 0.48 1.44 16 21 O -0.58 -14.42 9.46 -148.98 -1.41 -15.83 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.07 1.95 5.66 -2.38 -0.01 1.94 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.05 2.21 7.95 -2.39 -0.02 2.20 16 27 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.05 2.71 6.32 -2.38 -0.02 2.70 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.86 6.37 -2.39 -0.02 1.85 16 33 H 0.09 2.19 5.98 -2.39 -0.01 2.18 16 34 H 0.10 2.30 6.48 -2.39 -0.02 2.28 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.95 5.86 -2.39 -0.01 0.93 16 37 H 0.38 6.68 9.12 -74.05 -0.68 6.01 16 Total: -1.00 -68.59 275.98 -0.26 -68.85 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.38 Total: 11.36 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 4.43 Total: 2.80 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -5.69 Total: -115.36 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -1.41 Total: -15.83 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -68.59 -0.26 -68.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307772925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.456 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds