Wall clock time and date at job start Thu Apr 9 2020 11:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00310 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.47027 * 125.64482 * 359.69730 * 13 11 10 15 15 C 1.54314 * 107.27063 * 180.96835 * 14 13 11 16 16 C 1.55150 * 102.86875 * 22.52285 * 15 14 13 17 17 H 1.09001 * 111.00503 * 82.37906 * 16 15 14 18 18 C 1.52996 * 111.03991 * 206.21663 * 16 15 14 19 19 O 1.42905 * 109.47132 * 178.66536 * 18 16 15 20 20 C 1.47418 * 125.64761 * 179.97438 * 13 11 10 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.87996 * 300.50833 * 14 13 11 26 26 H 1.08994 * 109.88269 * 61.67689 * 14 13 11 27 27 H 1.09004 * 110.92572 * 264.10525 * 15 14 13 28 28 H 1.09004 * 110.58985 * 140.78846 * 15 14 13 29 29 H 1.09002 * 109.47231 * 298.66536 * 18 16 15 30 30 H 1.08999 * 109.47392 * 58.67139 * 18 16 15 31 31 H 0.96698 * 113.99672 * 179.97438 * 19 18 16 32 32 H 1.08994 * 110.37122 * 274.67207 * 20 13 11 33 33 H 1.09002 * 110.36900 * 37.00135 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5586 -5.1055 0.0156 13 7 2.6299 -5.9076 0.0203 14 6 4.0948 -5.7824 0.0144 15 6 4.6767 -7.2116 -0.0014 16 6 3.5102 -8.0532 -0.5828 17 1 3.4943 -7.9995 -1.6714 18 6 3.5917 -9.5058 -0.1096 19 8 2.4868 -10.2419 -0.6383 20 6 2.2777 -7.3391 0.0268 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 3.1568 -3.4352 0.0096 25 1 4.4168 -5.2392 -0.8741 26 1 4.4258 -5.2594 0.9115 27 1 4.9252 -7.5419 1.0072 28 1 5.5504 -7.2626 -0.6512 29 1 4.5242 -9.9498 -0.4582 30 1 3.5600 -9.5355 0.9796 31 1 2.4744 -11.1733 -0.3787 32 1 2.1060 -7.6830 1.0467 33 1 1.3948 -7.5154 -0.5876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325493050.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:19 Heat of formation + Delta-G solvation = -84.962991 kcal Electronic energy + Delta-G solvation = -15765.397970 eV Core-core repulsion = 13018.885486 eV Total energy + Delta-G solvation = -2746.512484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76730 -37.83757 -36.28397 -34.09608 -32.46342 -31.60655 -29.24422 -27.34262 -25.39193 -23.07666 -22.08097 -20.46248 -19.29114 -18.02558 -17.37906 -16.45974 -15.93737 -15.25038 -15.00691 -14.55143 -14.18422 -13.77895 -13.37361 -12.95533 -12.71701 -12.62827 -12.00367 -11.87131 -11.61973 -11.41684 -11.10532 -10.89378 -10.87991 -10.78270 -10.26995 -10.20935 -9.34962 -9.31304 -8.69685 -8.31683 -7.66924 -6.11960 -4.18384 3.22584 3.26266 3.33606 3.37155 3.88302 3.97215 4.34852 4.44393 4.53667 4.82831 4.99257 5.10126 5.14443 5.24057 5.24650 5.42473 5.51033 5.64024 5.70584 5.94591 6.08694 6.15966 6.58611 7.25639 7.38847 7.56689 7.61844 7.63807 7.94194 8.07516 8.80623 8.96446 9.37984 9.52859 10.98445 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.061178 B = 0.004931 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.568231 B = 5676.432733 C = 6068.372985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.727 5.727 11 C 0.711 3.289 12 O -0.597 6.597 13 N -0.648 5.648 14 C 0.102 3.898 15 C -0.121 4.121 16 C -0.105 4.105 17 H 0.091 0.909 18 C 0.089 3.911 19 O -0.571 6.571 20 C 0.139 3.861 21 H 0.265 0.735 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.386 0.614 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.379 0.621 32 H 0.059 0.941 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -16.922 0.492 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.379 5.379 11 C 0.412 3.588 12 O -0.476 6.476 13 N -0.389 5.389 14 C -0.022 4.022 15 C -0.159 4.159 16 C -0.124 4.124 17 H 0.109 0.891 18 C 0.011 3.989 19 O -0.376 6.376 20 C 0.015 3.985 21 H 0.075 0.925 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.218 0.782 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.225 0.775 32 H 0.077 0.923 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.755 -16.227 0.237 19.469 hybrid contribution 1.106 0.506 0.280 1.248 sum 11.860 -15.721 0.517 19.700 Atomic orbital electron populations 1.69992 1.06090 1.27123 1.49092 1.24946 0.94907 0.99384 0.94803 0.86357 0.79788 0.82994 0.77718 1.19678 1.20814 1.20819 1.21259 0.93272 0.90420 1.52920 0.91943 1.19001 0.87825 0.81066 0.97641 1.45722 1.10799 1.04204 1.77174 1.15698 0.84247 0.80428 0.78401 1.90876 1.13788 1.83835 1.59101 1.47656 1.05296 1.05609 1.80306 1.21890 0.81431 0.97163 1.01683 1.22594 0.97439 0.94018 1.01845 1.22392 0.95758 0.92671 1.01623 0.89080 1.22082 0.88719 0.91124 0.96996 1.86539 1.48597 1.25987 1.76458 1.21884 0.97378 0.79041 1.00192 0.92530 0.95724 0.95715 0.78177 0.91644 0.91625 0.90411 0.89912 0.93304 0.93283 0.77468 0.92323 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 9 C 0.27 7.41 5.43 -5.19 -0.03 7.39 16 10 N -0.73 -16.72 5.51 -66.41 -0.37 -17.08 16 11 C 0.71 16.17 8.49 -86.91 -0.74 15.44 16 12 O -0.60 -16.20 16.60 5.29 0.09 -16.11 16 13 N -0.65 -11.15 3.33 -176.23 -0.59 -11.74 16 14 C 0.10 1.27 6.14 -3.07 -0.02 1.25 16 15 C -0.12 -1.07 6.42 -24.91 -0.16 -1.23 16 16 C -0.11 -1.11 3.32 -88.46 -0.29 -1.41 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.09 0.73 6.49 37.16 0.24 0.97 16 19 O -0.57 -5.40 13.51 -35.23 -0.48 -5.87 16 20 C 0.14 2.06 6.24 -2.52 -0.02 2.04 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.02 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.39 7.69 7.31 -40.82 -0.30 7.39 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.38 1.72 9.12 45.56 0.42 2.14 16 32 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 33 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 LS Contribution 281.87 15.07 4.25 4.25 Total: -1.00 -35.46 281.87 -6.85 -42.32 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.05 Total: 3.29 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -1.43 Total: 10.72 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.22 Total: -54.73 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.39 Total: -21.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.46 -6.85 -42.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325493050.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.645 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds