Wall clock time and date at job start Thu Apr 9 2020 11:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86807 * 119.99656 * 2 1 4 4 H 1.48496 * 109.47025 * 269.99840 * 3 2 1 5 5 H 1.48499 * 109.47047 * 30.00202 * 3 2 1 6 6 H 1.48509 * 109.46840 * 150.00104 * 3 2 1 7 7 C 1.39007 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.37568 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.36671 * 126.88654 * 179.97438 * 9 7 2 11 11 C 1.34950 * 106.72691 * 180.23204 * 10 9 7 12 12 C 1.50700 * 125.48418 * 179.74349 * 11 10 9 13 13 S 1.81399 * 109.47421 * 89.99527 * 12 11 10 14 14 C 1.81392 * 102.99930 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47347 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47454 * 180.02562 * 15 14 13 17 17 N 1.33453 * 109.02493 * 359.56683 * 11 10 9 18 18 N 1.28761 * 109.99122 * 0.44963 * 17 11 10 19 19 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.63309 * 359.96283 * 10 9 7 21 21 H 1.09001 * 109.46690 * 209.99453 * 12 11 10 22 22 H 1.08997 * 109.47234 * 329.99126 * 12 11 10 23 23 H 1.08997 * 109.47341 * 300.00096 * 14 13 12 24 24 H 1.09003 * 109.47255 * 60.00056 * 14 13 12 25 25 H 1.09004 * 109.46965 * 299.99936 * 15 14 13 26 26 H 1.09003 * 109.46865 * 59.99857 * 15 14 13 27 27 H 0.96703 * 113.99991 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 2.4939 2.0465 -1.4000 5 1 1.4438 2.6527 0.7001 6 1 3.5441 1.4403 0.7001 7 6 2.0076 -1.2038 0.0005 8 1 3.0876 -1.2038 0.0001 9 7 1.3198 -2.3952 0.0016 10 6 1.8564 -3.6522 0.0018 11 6 0.8203 -4.5168 -0.0023 12 6 0.9348 -6.0194 -0.0092 13 16 0.9808 -6.6302 1.6983 14 6 1.1170 -8.4265 1.4855 15 6 1.1684 -9.1002 2.8582 16 8 1.2764 -10.5152 2.6906 17 7 -0.3221 -3.8269 0.0047 18 7 -0.0733 -2.5635 0.0035 19 1 -0.4851 0.8400 -0.0004 20 1 2.9065 -3.9046 0.0005 21 1 0.0750 -6.4469 -0.5250 22 1 1.8498 -6.3117 -0.5244 23 1 0.2524 -8.7934 0.9324 24 1 2.0273 -8.6589 0.9328 25 1 2.0333 -8.7332 3.4109 26 1 0.2584 -8.8678 3.4113 27 1 1.3144 -11.0080 3.5218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333502752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:32 Heat of formation + Delta-G solvation = 7.870815 kcal Electronic energy + Delta-G solvation = -13040.783020 eV Core-core repulsion = 10539.789977 eV Total energy + Delta-G solvation = -2500.993043 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.09619 -37.91242 -36.15509 -33.50075 -32.78556 -31.91167 -28.42904 -26.98244 -23.91289 -23.36870 -21.63343 -19.52418 -18.63746 -17.50657 -16.95251 -16.53142 -16.16439 -15.86886 -15.28680 -15.23492 -14.83206 -14.24896 -13.76281 -13.64046 -13.24080 -13.21724 -12.96202 -12.49433 -12.08660 -11.80688 -11.66334 -11.25747 -10.97964 -10.95841 -10.68737 -9.36251 -8.72397 -8.64282 -6.66337 0.44197 1.09135 1.37717 1.58052 1.60418 1.65483 2.05441 2.36422 2.71878 2.90498 3.48905 3.89484 3.93070 4.05803 4.13364 4.45674 4.49843 4.59182 4.74327 4.81370 4.83365 5.03013 5.11907 5.83158 5.93362 6.55766 6.84322 7.12786 8.13116 8.28590 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.075566 B = 0.004810 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.449815 B = 5819.325992 C = 5963.669047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C -0.003 4.003 3 Si 1.030 2.970 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.241 1.241 7 C -0.339 4.339 8 H 0.150 0.850 9 N -0.162 5.162 10 C -0.110 4.110 11 C -0.062 4.062 12 C 0.037 3.963 13 S -0.282 6.282 14 C -0.086 4.086 15 C 0.099 3.901 16 O -0.586 6.586 17 N -0.347 5.347 18 N -0.149 5.149 19 H 0.289 0.711 20 H 0.195 0.805 21 H 0.088 0.912 22 H 0.115 0.885 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 -10.257 3.294 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.218 4.218 3 Si 0.847 3.153 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.164 1.164 7 C -0.476 4.476 8 H 0.167 0.833 9 N 0.067 4.933 10 C -0.265 4.265 11 C -0.211 4.211 12 C -0.112 4.112 13 S -0.057 6.057 14 C -0.235 4.235 15 C 0.020 3.980 16 O -0.396 6.396 17 N -0.206 5.206 18 N -0.125 5.125 19 H 0.099 0.901 20 H 0.212 0.788 21 H 0.107 0.893 22 H 0.133 0.867 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.661 -8.753 3.617 11.034 hybrid contribution 0.959 -0.447 -0.573 1.203 sum 6.620 -9.200 3.044 11.736 Atomic orbital electron populations 1.70295 1.08841 1.30710 1.33685 1.27161 0.96548 1.04991 0.93107 0.84440 0.78314 0.72844 0.79723 1.18291 1.19664 1.16384 1.21061 0.93767 0.80669 1.52088 0.83279 1.47064 1.06698 1.06092 1.33422 1.23003 1.00821 0.84064 1.18636 1.20573 0.88948 0.95476 1.16079 1.21253 1.06036 0.90239 0.93682 1.87250 1.97652 1.05301 1.15494 1.23192 1.06153 0.92297 1.01818 1.21635 1.01303 0.80903 0.94166 1.86383 1.97351 1.17905 1.37946 1.73973 1.26887 1.00875 1.18893 1.82526 0.90486 1.07585 1.31893 0.90111 0.78774 0.89343 0.86686 0.89537 0.88645 0.91952 0.92545 0.74594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.77 11.89 21.66 0.26 -44.51 15 2 C 0.00 -0.15 5.50 84.96 0.47 0.32 15 3 Si 1.03 35.90 29.55 68.60 2.03 37.92 15 4 H -0.26 -8.60 7.11 99.48 0.71 -7.90 15 5 H -0.27 -9.35 7.11 99.48 0.71 -8.65 15 6 H -0.24 -7.59 7.11 99.48 0.71 -6.88 15 7 C -0.34 -17.35 10.31 83.98 0.87 -16.48 15 8 H 0.15 6.49 7.83 -2.91 -0.02 6.46 15 9 N -0.16 -8.98 3.78 -190.21 -0.72 -9.70 15 10 C -0.11 -5.18 11.47 83.18 0.95 -4.22 15 11 C -0.06 -2.91 6.36 41.56 0.26 -2.65 15 12 C 0.04 1.31 6.47 71.24 0.46 1.77 15 13 S -0.28 -9.37 21.72 -56.49 -1.23 -10.60 15 14 C -0.09 -2.08 6.31 71.98 0.45 -1.63 15 15 C 0.10 2.02 7.05 71.98 0.51 2.52 15 16 O -0.59 -10.91 13.66 -148.98 -2.03 -12.95 15 17 N -0.35 -19.63 12.33 -48.99 -0.60 -20.23 15 18 N -0.15 -9.12 11.73 37.02 0.43 -8.69 15 19 H 0.29 14.44 8.31 -92.71 -0.77 13.67 15 20 H 0.20 7.35 8.06 -2.91 -0.02 7.32 15 21 H 0.09 3.01 8.14 -2.39 -0.02 2.99 15 22 H 0.11 3.27 8.14 -2.39 -0.02 3.25 15 23 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 15 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 27 H 0.40 3.44 9.12 -74.06 -0.68 2.76 15 Total: -1.00 -72.28 261.61 2.62 -69.66 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.51 Total: 19.46 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 3.97 Total: -20.36 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -0.63 Total: -83.14 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -2.03 Total: -12.95 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.92 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -1.23 Total: -10.60 kcal Total: -72.28 2.62 -69.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333502752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.527 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds