Wall clock time and date at job start Thu Apr 9 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47147 * 349.06183 * 3 2 1 5 5 C 1.36931 * 120.00374 * 264.04034 * 4 3 2 6 6 H 1.07999 * 120.00444 * 196.65457 * 5 4 3 7 7 C 1.38823 * 119.99693 * 16.65470 * 5 4 3 8 8 N 1.31618 * 119.99651 * 15.13102 * 7 5 4 9 9 Si 1.86796 * 119.99988 * 195.12925 * 7 5 4 10 10 H 1.48503 * 109.47045 * 90.00156 * 9 7 5 11 11 H 1.48501 * 109.47253 * 209.99925 * 9 7 5 12 12 H 1.48498 * 109.47415 * 330.00142 * 9 7 5 13 13 C 1.46503 * 119.99745 * 84.04936 * 4 3 2 14 14 C 1.50695 * 109.47550 * 83.58362 * 13 4 3 15 15 C 1.38237 * 120.41655 * 261.84809 * 14 13 4 16 16 N 1.31850 * 120.76372 * 179.97438 * 15 14 13 17 17 C 1.31890 * 121.72458 * 0.02562 * 16 15 14 18 18 C 1.38176 * 120.76690 * 359.97287 * 17 16 15 19 19 C 1.38622 * 120.42148 * 81.79763 * 14 13 4 20 20 C 1.50698 * 120.79066 * 0.02631 * 19 14 13 21 21 H 4.40637 * 5.51374 * 179.97438 * 4 1 2 22 22 H 1.09000 * 109.46757 * 229.05957 * 3 2 1 23 23 H 1.09005 * 109.47209 * 109.06732 * 3 2 1 24 24 H 0.97007 * 119.99648 * 179.97438 * 8 7 5 25 25 H 1.09003 * 109.46863 * 323.57594 * 13 4 3 26 26 H 1.09000 * 109.46835 * 203.58216 * 13 4 3 27 27 H 1.08000 * 119.61380 * 359.95069 * 15 14 13 28 28 H 1.07999 * 119.61524 * 179.97438 * 17 16 15 29 29 H 1.08000 * 120.41835 * 179.75344 * 18 17 16 30 30 H 1.08997 * 109.47286 * 271.01468 * 20 19 14 31 31 H 1.08999 * 109.47158 * 31.01643 * 20 19 14 32 32 H 1.08999 * 109.47062 * 151.01085 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3552 0.2621 5 6 3.4794 -1.7248 1.5348 6 1 4.0818 -2.6065 1.6968 7 6 3.0544 -0.9662 2.6169 8 7 2.0920 -0.0816 2.4629 9 14 3.8483 -1.2008 4.2914 10 1 5.0089 -0.2836 4.4218 11 1 2.8574 -0.8996 5.3556 12 1 4.3098 -2.6056 4.4280 13 6 3.2555 -2.3157 -0.8376 14 6 4.5669 -2.1031 -1.5488 15 6 4.6189 -1.3613 -2.7142 16 7 5.7626 -1.1706 -3.3418 17 6 6.8944 -1.6746 -2.8895 18 6 6.9200 -2.4267 -1.7306 19 6 5.7366 -2.6480 -1.0422 20 6 5.7223 -3.4623 0.2257 21 1 -1.0498 -0.0003 0.0003 22 1 3.0090 0.6742 0.7763 23 1 3.0092 0.3366 -0.9713 24 1 1.7947 0.4482 3.2191 25 1 2.4339 -2.1700 -1.5389 26 1 3.2182 -3.3299 -0.4399 27 1 3.7120 -0.9335 -3.1153 28 1 7.8117 -1.4974 -3.4311 29 1 7.8493 -2.8401 -1.3674 30 1 5.8603 -2.8029 1.0826 31 1 4.7668 -3.9790 0.3150 32 1 6.5296 -4.1941 0.1966 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:16 Heat of formation + Delta-G solvation = 115.399353 kcal Electronic energy + Delta-G solvation = -15726.993105 eV Core-core repulsion = 13269.166425 eV Total energy + Delta-G solvation = -2457.826680 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.83665 -36.25265 -33.59560 -32.00847 -31.53387 -30.05632 -27.66926 -26.46460 -25.43978 -22.60661 -21.96999 -20.34099 -17.54792 -16.45366 -16.00798 -15.92167 -15.24000 -14.74357 -13.95893 -13.46024 -13.32492 -13.23227 -12.61133 -12.39856 -12.22687 -12.13540 -11.46458 -11.33278 -10.96818 -10.90640 -10.71343 -10.19625 -9.95654 -9.16351 -9.02599 -8.88909 -8.84485 -8.45519 -8.37895 -7.05192 -5.80703 -3.25870 1.58314 1.75612 3.32609 3.38430 3.41155 4.09729 4.31625 4.38098 4.49936 4.85881 5.14740 5.24379 5.35254 5.43176 5.56630 5.70496 5.83404 5.88496 5.91692 6.09120 6.18959 6.26959 6.49385 6.54145 6.64689 6.73726 6.98726 7.20470 7.32582 7.45276 7.68971 8.24212 8.40404 9.07383 9.17732 9.71930 10.17407 11.22293 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.010161 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.189425 B = 2755.051268 C = 3626.442759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.090 4.090 3 C 0.265 3.735 4 N -0.579 5.579 5 C -0.265 4.265 6 H 0.084 0.916 7 C 0.000 4.000 8 N -0.895 5.895 9 Si 0.902 3.098 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.280 1.280 13 C 0.183 3.817 14 C -0.133 4.133 15 C 0.099 3.901 16 N -0.497 5.497 17 C 0.081 3.919 18 C -0.182 4.182 19 C -0.022 4.022 20 C -0.117 4.117 21 H 0.190 0.810 22 H 0.108 0.892 23 H 0.031 0.969 24 H 0.254 0.746 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -4.101 -6.343 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.093 4.093 3 C 0.140 3.860 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.102 0.898 7 C -0.198 4.198 8 N -0.540 5.540 9 Si 0.733 3.267 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.205 1.205 13 C 0.055 3.945 14 C -0.138 4.138 15 C -0.058 4.058 16 N -0.206 5.206 17 C -0.076 4.076 18 C -0.202 4.202 19 C -0.031 4.031 20 C -0.173 4.173 21 H 0.207 0.793 22 H 0.125 0.875 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.890 -3.516 -6.934 9.754 hybrid contribution 0.074 -0.478 1.878 1.940 sum 5.964 -3.994 -5.056 8.779 Atomic orbital electron populations 1.24201 0.95370 1.04446 1.08702 1.24347 0.95287 0.96347 0.93345 1.17925 0.82628 0.87714 0.97759 1.43981 1.74395 1.07882 1.03519 1.19490 1.26781 1.11079 0.81978 0.89790 1.24952 0.97172 0.99819 0.97861 1.70066 1.26905 1.26879 1.30101 0.86287 0.78645 0.77791 0.84021 1.21472 1.21805 1.20495 1.19717 0.90039 0.94527 0.90222 1.21960 0.98951 0.97286 0.95602 1.22594 0.95619 0.95362 0.92235 1.67586 0.98944 1.20717 1.33383 1.22492 0.96078 0.94896 0.94176 1.21942 0.98413 1.02224 0.97575 1.20180 0.92316 0.95138 0.95444 1.21013 1.02368 0.98821 0.95092 0.79277 0.87486 0.95107 0.93493 0.93467 0.91605 0.83502 0.83779 0.85728 0.89159 0.90570 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.99 19.25 29.55 0.57 -6.42 16 2 C -0.09 -2.19 11.72 -37.12 -0.43 -2.62 16 3 C 0.26 6.25 5.42 -6.83 -0.04 6.21 16 4 N -0.58 -13.45 2.48 -177.95 -0.44 -13.89 16 5 C -0.26 -6.62 9.05 -15.06 -0.14 -6.75 16 6 H 0.08 1.98 4.88 -52.49 -0.26 1.72 16 7 C 0.00 0.01 5.05 -17.43 -0.09 -0.08 16 8 N -0.90 -24.80 9.10 55.49 0.51 -24.30 16 9 Si 0.90 20.89 29.58 -169.99 -5.03 15.86 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.18 3.55 5.37 -5.19 -0.03 3.53 16 14 C -0.13 -2.38 5.47 -104.48 -0.57 -2.95 16 15 C 0.10 1.71 10.83 -17.54 -0.19 1.52 16 16 N -0.50 -8.54 10.36 -13.25 -0.14 -8.68 16 17 C 0.08 1.21 11.18 -17.55 -0.20 1.01 16 18 C -0.18 -2.69 9.81 -39.44 -0.39 -3.07 16 19 C -0.02 -0.37 5.92 -104.32 -0.62 -0.99 16 20 C -0.12 -1.82 8.17 36.00 0.29 -1.53 16 21 H 0.19 3.60 7.80 -54.10 -0.42 3.17 16 22 H 0.11 2.80 6.15 -51.93 -0.32 2.48 16 23 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 26 H 0.07 1.25 6.29 -51.93 -0.33 0.92 16 27 H 0.15 2.33 8.05 -52.49 -0.42 1.91 16 28 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.09 1.57 6.87 -51.93 -0.36 1.21 16 31 H 0.08 1.22 5.75 -51.93 -0.30 0.92 16 32 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 274.53 15.07 4.14 4.14 Total: -1.00 -28.97 274.53 -6.43 -35.40 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.64 Total: 3.61 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.82 Total: -12.15 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.07 Total: -46.87 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.97 -6.43 -35.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.798 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds