Wall clock time and date at job start Thu Apr 9 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47147 * 349.06183 * 3 2 1 5 5 C 1.36931 * 120.00374 * 264.04034 * 4 3 2 6 6 H 1.07999 * 120.00444 * 196.65457 * 5 4 3 7 7 C 1.38823 * 119.99693 * 16.65470 * 5 4 3 8 8 N 1.31618 * 119.99651 * 15.13102 * 7 5 4 9 9 Si 1.86796 * 119.99988 * 195.12925 * 7 5 4 10 10 H 1.48503 * 109.47045 * 90.00156 * 9 7 5 11 11 H 1.48501 * 109.47253 * 209.99925 * 9 7 5 12 12 H 1.48498 * 109.47415 * 330.00142 * 9 7 5 13 13 C 1.46503 * 119.99745 * 84.04936 * 4 3 2 14 14 C 1.50695 * 109.47550 * 83.58362 * 13 4 3 15 15 C 1.38237 * 120.41655 * 261.84809 * 14 13 4 16 16 N 1.31850 * 120.76372 * 179.97438 * 15 14 13 17 17 C 1.31890 * 121.72458 * 0.02562 * 16 15 14 18 18 C 1.38176 * 120.76690 * 359.97287 * 17 16 15 19 19 C 1.38622 * 120.42148 * 81.79763 * 14 13 4 20 20 C 1.50698 * 120.79066 * 0.02631 * 19 14 13 21 21 H 4.40637 * 5.51374 * 179.97438 * 4 1 2 22 22 H 1.09000 * 109.46757 * 229.05957 * 3 2 1 23 23 H 1.09005 * 109.47209 * 109.06732 * 3 2 1 24 24 H 0.97007 * 119.99648 * 179.97438 * 8 7 5 25 25 H 1.09003 * 109.46863 * 323.57594 * 13 4 3 26 26 H 1.09000 * 109.46835 * 203.58216 * 13 4 3 27 27 H 1.08000 * 119.61380 * 359.95069 * 15 14 13 28 28 H 1.07999 * 119.61524 * 179.97438 * 17 16 15 29 29 H 1.08000 * 120.41835 * 179.75344 * 18 17 16 30 30 H 1.08997 * 109.47286 * 271.01468 * 20 19 14 31 31 H 1.08999 * 109.47158 * 31.01643 * 20 19 14 32 32 H 1.08999 * 109.47062 * 151.01085 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3552 0.2621 5 6 3.4794 -1.7248 1.5348 6 1 4.0818 -2.6065 1.6968 7 6 3.0544 -0.9662 2.6169 8 7 2.0920 -0.0816 2.4629 9 14 3.8483 -1.2008 4.2914 10 1 5.0089 -0.2836 4.4218 11 1 2.8574 -0.8996 5.3556 12 1 4.3098 -2.6056 4.4280 13 6 3.2555 -2.3157 -0.8376 14 6 4.5669 -2.1031 -1.5488 15 6 4.6189 -1.3613 -2.7142 16 7 5.7626 -1.1706 -3.3418 17 6 6.8944 -1.6746 -2.8895 18 6 6.9200 -2.4267 -1.7306 19 6 5.7366 -2.6480 -1.0422 20 6 5.7223 -3.4623 0.2257 21 1 -1.0498 -0.0003 0.0003 22 1 3.0090 0.6742 0.7763 23 1 3.0092 0.3366 -0.9713 24 1 1.7947 0.4482 3.2191 25 1 2.4339 -2.1700 -1.5389 26 1 3.2182 -3.3299 -0.4399 27 1 3.7120 -0.9335 -3.1153 28 1 7.8117 -1.4974 -3.4311 29 1 7.8493 -2.8401 -1.3674 30 1 5.8603 -2.8029 1.0826 31 1 4.7668 -3.9790 0.3150 32 1 6.5296 -4.1941 0.1966 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:16 Heat of formation + Delta-G solvation = 99.796694 kcal Electronic energy + Delta-G solvation = -15727.669687 eV Core-core repulsion = 13269.166425 eV Total energy + Delta-G solvation = -2458.503262 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.11623 -37.97140 -34.98645 -33.61623 -33.29159 -31.65630 -28.99140 -28.19046 -27.10551 -24.16340 -23.33680 -21.80765 -19.36486 -18.20230 -17.34469 -17.23713 -16.98770 -16.06061 -15.65161 -15.23742 -14.84556 -14.72482 -14.03992 -13.72813 -13.58430 -13.38020 -13.27751 -13.12915 -12.73981 -12.42143 -12.29999 -11.97272 -11.76029 -10.87964 -10.80571 -10.35317 -10.21301 -10.16011 -9.78206 -8.91389 -7.76909 -5.21728 0.33462 0.47875 1.48649 1.50700 1.57263 2.33119 2.53238 2.60377 2.99768 3.36111 3.68162 3.90931 3.99045 4.00744 4.12908 4.18408 4.26157 4.63964 4.72497 4.79301 4.84906 4.93942 5.02358 5.06506 5.24113 5.33858 5.43141 5.66372 5.69779 5.74578 5.97023 6.32054 7.13509 7.15766 7.34826 7.84639 8.27993 9.24553 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.010161 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.189425 B = 2755.051268 C = 3626.442759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.129 4.129 3 C 0.271 3.729 4 N -0.590 5.590 5 C -0.256 4.256 6 H 0.097 0.903 7 C -0.056 4.056 8 N -0.924 5.924 9 Si 0.958 3.042 10 H -0.291 1.291 11 H -0.305 1.305 12 H -0.265 1.265 13 C 0.187 3.813 14 C -0.149 4.149 15 C 0.090 3.910 16 N -0.516 5.516 17 C 0.081 3.919 18 C -0.176 4.176 19 C -0.036 4.036 20 C -0.112 4.112 21 H 0.222 0.778 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.243 0.757 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.180 0.820 29 H 0.159 0.841 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 -5.226 -6.982 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.132 4.132 3 C 0.145 3.855 4 N -0.310 5.310 5 C -0.385 4.385 6 H 0.115 0.885 7 C -0.250 4.250 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.218 1.218 11 H -0.233 1.233 12 H -0.189 1.189 13 C 0.061 3.939 14 C -0.154 4.154 15 C -0.067 4.067 16 N -0.225 5.225 17 C -0.076 4.076 18 C -0.195 4.195 19 C -0.044 4.044 20 C -0.168 4.168 21 H 0.239 0.761 22 H 0.095 0.905 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.169 0.831 28 H 0.197 0.803 29 H 0.177 0.823 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.425 -4.672 -7.603 11.609 hybrid contribution -0.344 -0.171 1.963 2.000 sum 7.081 -4.843 -5.640 10.266 Atomic orbital electron populations 1.25025 0.96387 1.03078 1.07288 1.24705 0.96098 0.97694 0.94654 1.17726 0.82753 0.87644 0.97346 1.44142 1.74493 1.08368 1.03987 1.19900 1.25317 1.10627 0.82688 0.88509 1.25611 0.98144 1.00522 1.00755 1.70250 1.28636 1.28198 1.30005 0.85389 0.77213 0.78199 0.80409 1.21820 1.23281 1.18916 1.19724 0.91246 0.93677 0.89267 1.21724 0.98463 0.98890 0.96287 1.22681 0.96239 0.95447 0.92302 1.67638 0.99484 1.21501 1.33883 1.23137 0.96548 0.93635 0.94283 1.22289 0.98942 1.01354 0.96914 1.20449 0.92721 0.95258 0.96006 1.20945 1.03157 0.98896 0.93809 0.76087 0.90532 0.93535 0.94736 0.93291 0.91433 0.83108 0.80313 0.82344 0.91039 0.91531 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.39 19.25 74.32 1.43 -11.96 16 2 C -0.13 -6.28 11.72 31.13 0.36 -5.92 16 3 C 0.27 13.01 5.42 84.57 0.46 13.46 16 4 N -0.59 -27.52 2.48 -716.90 -1.78 -29.30 16 5 C -0.26 -12.77 9.05 84.04 0.76 -12.01 16 6 H 0.10 4.48 4.88 -2.91 -0.01 4.47 16 7 C -0.06 -2.94 5.05 84.86 0.43 -2.52 16 8 N -0.92 -52.35 9.10 21.65 0.20 -52.15 16 9 Si 0.96 43.31 29.58 68.60 2.03 45.34 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.31 -14.38 7.11 99.48 0.71 -13.68 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 C 0.19 7.22 5.37 85.63 0.46 7.68 16 14 C -0.15 -5.18 5.47 -19.77 -0.11 -5.29 16 15 C 0.09 3.03 10.83 84.69 0.92 3.94 16 16 N -0.52 -16.72 10.36 -195.84 -2.03 -18.75 16 17 C 0.08 2.16 11.18 84.67 0.95 3.11 16 18 C -0.18 -4.58 9.81 22.36 0.22 -4.37 16 19 C -0.04 -1.12 5.92 -19.67 -0.12 -1.24 16 20 C -0.11 -3.25 8.17 71.24 0.58 -2.66 16 21 H 0.22 7.99 7.80 -4.43 -0.03 7.96 16 22 H 0.08 4.15 6.15 -2.39 -0.01 4.14 16 23 H 0.05 2.03 8.12 -2.38 -0.02 2.01 16 24 H 0.24 13.77 8.31 -92.70 -0.77 13.00 16 25 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 26 H 0.07 2.54 6.29 -2.39 -0.02 2.52 16 27 H 0.15 4.76 8.05 -2.91 -0.02 4.73 16 28 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.07 2.36 6.87 -2.39 -0.02 2.34 16 31 H 0.07 2.04 5.75 -2.39 -0.01 2.02 16 32 H 0.09 1.92 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -61.73 274.53 5.88 -55.85 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.11 Total: 16.77 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 6.34 Total: -17.76 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.61 Total: -100.20 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -61.73 5.88 -55.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.651 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds