Wall clock time and date at job start Thu Apr 9 2020 12:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46294 * 114.00016 * 2 1 4 4 C 1.46965 * 110.99863 * 243.79786 * 3 2 1 5 5 C 1.53054 * 109.36279 * 176.81049 * 4 3 2 6 6 N 1.46949 * 109.36291 * 58.40257 * 5 4 3 7 7 C 1.46907 * 111.00070 * 176.81047 * 6 5 4 8 8 C 1.53008 * 109.46691 * 313.79938 * 7 6 5 9 9 H 1.09000 * 109.46953 * 59.99509 * 8 7 6 10 10 O 1.42906 * 109.46821 * 299.99751 * 8 7 6 11 11 C 1.50699 * 109.47144 * 179.97438 * 8 7 6 12 12 H 1.08007 * 119.99596 * 359.97438 * 11 8 7 13 13 C 1.37867 * 120.00098 * 179.97438 * 11 8 7 14 14 N 1.31518 * 120.00316 * 0.02562 * 13 11 8 15 15 Si 1.86809 * 119.99990 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46578 * 60.00580 * 15 13 11 17 17 H 1.48498 * 109.46813 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47085 * 300.00647 * 15 13 11 19 19 C 1.46958 * 110.88248 * 300.67387 * 6 5 4 20 20 C 1.46955 * 111.00347 * 119.99662 * 3 2 1 21 21 H 1.09002 * 109.47382 * 300.00378 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00485 * 1 2 3 24 24 H 1.08996 * 109.48284 * 296.77586 * 4 3 2 25 25 H 1.08992 * 109.48731 * 56.84152 * 4 3 2 26 26 H 1.08995 * 109.48796 * 298.43166 * 5 4 3 27 27 H 1.09001 * 109.49831 * 178.37850 * 5 4 3 28 28 H 1.09006 * 109.47013 * 73.79225 * 7 6 5 29 29 H 1.08998 * 109.47325 * 193.79827 * 7 6 5 30 30 H 0.96698 * 113.99667 * 300.00096 * 10 8 7 31 31 H 0.96994 * 120.00401 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.48760 * 299.35689 * 19 6 5 33 33 H 1.09005 * 109.49073 * 179.29286 * 19 6 5 34 34 H 1.08996 * 109.48802 * 303.15555 * 20 3 2 35 35 H 1.08997 * 109.48901 * 63.19851 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7917 1.5712 -1.2311 5 6 3.3300 3.0039 -1.2280 6 7 4.1708 3.2060 -0.0399 7 6 4.7683 4.5481 -0.0399 8 6 5.3435 4.8502 -1.4252 9 1 4.5459 4.8075 -2.1669 10 8 6.3450 3.8828 -1.7465 11 6 5.9559 6.2271 -1.4255 12 1 5.9365 6.8269 -0.5275 13 6 6.5410 6.7211 -2.5719 14 7 6.5643 5.9910 -3.6656 15 14 7.2996 8.4283 -2.5724 16 1 8.3855 8.4876 -1.5613 17 1 7.8578 8.7214 -3.9169 18 1 6.2579 9.4328 -2.2396 19 6 3.4032 2.9714 1.1911 20 6 2.8649 1.5387 1.1882 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 3.6247 0.8698 -1.2793 25 1 2.1444 1.4277 -2.0961 26 1 2.4962 3.7056 -1.2071 27 1 3.9238 3.1714 -2.1266 28 1 4.0043 5.2859 0.2051 29 1 5.5659 4.5907 0.7018 30 1 7.0873 3.8647 -1.1270 31 1 6.9755 6.3387 -4.4723 32 1 2.5702 3.6728 1.2395 33 1 4.0506 3.1149 2.0563 34 1 2.2710 1.3715 2.0867 35 1 3.6985 0.8367 1.1675 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930662023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:41 Heat of formation + Delta-G solvation = -35.049292 kcal Electronic energy + Delta-G solvation = -16813.338713 eV Core-core repulsion = 14041.679171 eV Total energy + Delta-G solvation = -2771.659542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.86741 -36.66197 -35.24867 -32.71839 -32.08434 -30.75710 -28.46648 -26.56663 -25.10088 -23.60207 -23.04128 -20.45210 -19.33009 -17.40425 -16.78982 -15.35963 -15.23355 -14.80812 -14.68978 -14.55466 -14.22618 -13.87251 -13.76425 -13.55771 -12.75486 -12.55195 -12.12730 -11.83365 -11.20619 -11.13568 -11.02892 -10.90870 -10.88169 -10.59939 -10.50446 -10.07881 -9.91206 -8.94446 -8.63773 -8.56816 -8.09516 -7.76844 -6.02430 -4.20789 2.64924 3.28086 3.33621 3.35115 4.28929 4.46007 4.79005 5.24378 5.25592 5.33963 5.42054 5.45652 5.49332 5.55687 5.67277 5.68377 5.83452 5.93452 6.05856 6.09576 6.20118 6.29473 6.41136 6.47006 6.79533 6.84334 7.07432 7.48959 7.57829 7.73205 7.82476 8.17430 8.82253 9.42632 9.58691 11.01806 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.059354 B = 0.005514 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.634170 B = 5076.457102 C = 5251.858640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.272 6.272 3 N -0.364 5.364 4 C 0.045 3.955 5 C 0.059 3.941 6 N -0.533 5.533 7 C 0.030 3.970 8 C 0.230 3.770 9 H 0.058 0.942 10 O -0.557 6.557 11 C -0.576 4.576 12 H 0.055 0.945 13 C 0.081 3.919 14 N -0.859 5.859 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.058 3.942 20 C 0.047 3.953 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.110 0.890 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.346 0.654 31 H 0.261 0.739 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.768 -7.613 7.471 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.276 6.276 3 N -0.135 5.135 4 C -0.083 4.083 5 C -0.069 4.069 6 N -0.258 5.258 7 C -0.097 4.097 8 C 0.172 3.828 9 H 0.076 0.924 10 O -0.359 6.359 11 C -0.614 4.614 12 H 0.073 0.927 13 C -0.126 4.126 14 N -0.495 5.495 15 Si 0.717 3.283 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.071 4.071 20 C -0.082 4.082 21 H 0.060 0.940 22 H 0.102 0.898 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.128 0.872 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.189 0.811 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.042 -7.967 6.764 13.820 hybrid contribution 0.557 1.316 0.512 1.518 sum -8.485 -6.651 7.276 13.007 Atomic orbital electron populations 1.22548 0.81174 1.01203 1.00394 1.90665 1.20388 1.19631 1.96880 1.67847 1.34604 1.07094 1.03926 1.22543 0.96433 0.97868 0.91447 1.22285 0.95351 0.93137 0.96162 1.62233 1.32263 1.30494 1.00760 1.23077 0.97819 0.85788 1.03007 1.19440 0.88152 0.87031 0.88191 0.92439 1.86532 1.33944 1.60444 1.54952 1.21602 1.40708 1.01572 0.97509 0.92718 1.25010 0.95176 0.97004 0.95363 1.70057 1.42098 1.36223 1.01097 0.86724 0.79656 0.84684 0.77233 1.20118 1.21176 1.20206 1.22169 0.96212 0.94115 0.94625 1.22435 0.95654 0.97403 0.92679 0.94047 0.89823 0.93914 0.92715 0.90036 0.94621 0.87246 0.95276 0.91508 0.81083 0.92890 0.94420 0.89915 0.90239 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.51 101.05 1.16 1.65 16 2 O -0.27 -4.05 10.96 -13.92 -0.15 -4.21 16 3 N -0.36 -5.63 5.05 -113.64 -0.57 -6.21 16 4 C 0.05 0.74 6.16 -3.76 -0.02 0.71 16 5 C 0.06 1.07 4.93 -3.77 -0.02 1.05 16 6 N -0.53 -9.72 4.73 -234.45 -1.11 -10.83 16 7 C 0.03 0.62 4.88 -3.82 -0.02 0.60 16 8 C 0.23 5.66 2.12 -27.88 -0.06 5.60 16 9 H 0.06 1.54 6.26 -51.93 -0.33 1.22 16 10 O -0.56 -14.15 12.40 -35.23 -0.44 -14.58 16 11 C -0.58 -15.54 8.76 -34.44 -0.30 -15.85 16 12 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 14 N -0.86 -25.08 12.84 55.43 0.71 -24.36 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 C 0.06 0.88 5.58 -3.77 -0.02 0.86 16 20 C 0.05 0.67 6.16 -3.77 -0.02 0.65 16 21 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.11 2.26 5.84 -51.93 -0.30 1.95 16 28 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.35 7.98 9.04 45.56 0.41 8.39 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 287.16 15.07 4.33 4.33 Total: -1.00 -30.11 287.16 -6.48 -36.59 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.83 Total: 5.95 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 0.60 Total: -2.59 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.97 Total: -41.40 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.59 Total: -18.79 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.11 -6.48 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930662023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.538 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds