Wall clock time and date at job start Thu Apr 9 2020 12:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46294 * 114.00016 * 2 1 4 4 C 1.46965 * 110.99863 * 243.79786 * 3 2 1 5 5 C 1.53054 * 109.36279 * 176.81049 * 4 3 2 6 6 N 1.46949 * 109.36291 * 58.40257 * 5 4 3 7 7 C 1.46907 * 111.00070 * 176.81047 * 6 5 4 8 8 C 1.53008 * 109.46691 * 313.79938 * 7 6 5 9 9 H 1.09000 * 109.46953 * 59.99509 * 8 7 6 10 10 O 1.42906 * 109.46821 * 299.99751 * 8 7 6 11 11 C 1.50699 * 109.47144 * 179.97438 * 8 7 6 12 12 H 1.08007 * 119.99596 * 359.97438 * 11 8 7 13 13 C 1.37867 * 120.00098 * 179.97438 * 11 8 7 14 14 N 1.31518 * 120.00316 * 0.02562 * 13 11 8 15 15 Si 1.86809 * 119.99990 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46578 * 60.00580 * 15 13 11 17 17 H 1.48498 * 109.46813 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47085 * 300.00647 * 15 13 11 19 19 C 1.46958 * 110.88248 * 300.67387 * 6 5 4 20 20 C 1.46955 * 111.00347 * 119.99662 * 3 2 1 21 21 H 1.09002 * 109.47382 * 300.00378 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00485 * 1 2 3 24 24 H 1.08996 * 109.48284 * 296.77586 * 4 3 2 25 25 H 1.08992 * 109.48731 * 56.84152 * 4 3 2 26 26 H 1.08995 * 109.48796 * 298.43166 * 5 4 3 27 27 H 1.09001 * 109.49831 * 178.37850 * 5 4 3 28 28 H 1.09006 * 109.47013 * 73.79225 * 7 6 5 29 29 H 1.08998 * 109.47325 * 193.79827 * 7 6 5 30 30 H 0.96698 * 113.99667 * 300.00096 * 10 8 7 31 31 H 0.96994 * 120.00401 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.48760 * 299.35689 * 19 6 5 33 33 H 1.09005 * 109.49073 * 179.29286 * 19 6 5 34 34 H 1.08996 * 109.48802 * 303.15555 * 20 3 2 35 35 H 1.08997 * 109.48901 * 63.19851 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7917 1.5712 -1.2311 5 6 3.3300 3.0039 -1.2280 6 7 4.1708 3.2060 -0.0399 7 6 4.7683 4.5481 -0.0399 8 6 5.3435 4.8502 -1.4252 9 1 4.5459 4.8075 -2.1669 10 8 6.3450 3.8828 -1.7465 11 6 5.9559 6.2271 -1.4255 12 1 5.9365 6.8269 -0.5275 13 6 6.5410 6.7211 -2.5719 14 7 6.5643 5.9910 -3.6656 15 14 7.2996 8.4283 -2.5724 16 1 8.3855 8.4876 -1.5613 17 1 7.8578 8.7214 -3.9169 18 1 6.2579 9.4328 -2.2396 19 6 3.4032 2.9714 1.1911 20 6 2.8649 1.5387 1.1882 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 3.6247 0.8698 -1.2793 25 1 2.1444 1.4277 -2.0961 26 1 2.4962 3.7056 -1.2071 27 1 3.9238 3.1714 -2.1266 28 1 4.0043 5.2859 0.2051 29 1 5.5659 4.5907 0.7018 30 1 7.0873 3.8647 -1.1270 31 1 6.9755 6.3387 -4.4723 32 1 2.5702 3.6728 1.2395 33 1 4.0506 3.1149 2.0563 34 1 2.2710 1.3715 2.0867 35 1 3.6985 0.8367 1.1675 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930662023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:41 Heat of formation + Delta-G solvation = -59.599372 kcal Electronic energy + Delta-G solvation = -16814.403284 eV Core-core repulsion = 14041.679171 eV Total energy + Delta-G solvation = -2772.724113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25067 -38.08922 -36.84208 -34.27281 -34.03043 -32.05430 -30.20579 -27.88673 -26.53614 -25.11835 -24.44581 -22.12853 -20.73629 -19.17870 -18.22404 -16.70659 -16.63165 -16.44743 -16.23299 -16.15679 -15.71599 -15.40568 -15.23668 -14.76343 -14.34790 -14.09905 -13.30943 -13.15699 -13.04771 -12.80753 -12.74720 -12.54311 -12.33897 -12.17200 -12.04039 -11.76466 -11.01085 -10.87750 -10.64469 -10.07366 -9.84441 -9.22940 -8.12210 -6.37851 1.42481 1.43651 1.51806 1.53658 2.39623 2.95771 3.14574 3.59275 3.97673 4.09677 4.18657 4.23839 4.32966 4.37665 4.55649 4.61134 4.61897 4.63105 4.72775 4.77886 4.84940 4.86172 4.89908 5.00014 5.09118 5.58565 5.61872 5.76279 5.93405 6.01987 6.17608 6.20076 6.74621 7.36179 7.61022 8.92023 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.059354 B = 0.005514 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.634170 B = 5076.457102 C = 5251.858640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.285 6.285 3 N -0.370 5.370 4 C 0.055 3.945 5 C 0.067 3.933 6 N -0.541 5.541 7 C 0.047 3.953 8 C 0.231 3.769 9 H 0.028 0.972 10 O -0.571 6.571 11 C -0.590 4.590 12 H 0.060 0.940 13 C 0.028 3.972 14 N -0.899 5.899 15 Si 0.959 3.041 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.269 1.269 19 C 0.059 3.941 20 C 0.050 3.950 21 H 0.049 0.951 22 H 0.111 0.889 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.354 0.646 31 H 0.261 0.739 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 -7.522 9.039 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.290 6.290 3 N -0.139 5.139 4 C -0.074 4.074 5 C -0.062 4.062 6 N -0.266 5.266 7 C -0.080 4.080 8 C 0.173 3.827 9 H 0.046 0.954 10 O -0.375 6.375 11 C -0.628 4.628 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.536 5.536 15 Si 0.783 3.217 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.194 1.194 19 C -0.069 4.069 20 C -0.078 4.078 21 H 0.068 0.932 22 H 0.129 0.871 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.199 0.801 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.665 -7.875 8.359 15.010 hybrid contribution 0.671 1.210 0.043 1.384 sum -8.994 -6.665 8.403 13.997 Atomic orbital electron populations 1.22805 0.79163 1.03106 1.00789 1.90654 1.22568 1.18764 1.96979 1.67828 1.34390 1.08083 1.03614 1.22364 0.96274 0.96034 0.92735 1.22076 0.94638 0.94490 0.95006 1.62194 1.33332 1.28963 1.02124 1.22716 0.98027 0.87080 1.00195 1.19297 0.87304 0.86239 0.89875 0.95410 1.86489 1.34608 1.60557 1.55805 1.22029 1.40407 1.02698 0.97677 0.92192 1.25860 0.95702 1.00949 0.94952 1.70201 1.43364 1.38276 1.01764 0.85631 0.78956 0.79822 0.77266 1.19178 1.21137 1.19395 1.22262 0.96346 0.94782 0.93491 1.22463 0.95676 0.96425 0.93260 0.93247 0.87142 0.93889 0.94083 0.89043 0.94834 0.90547 0.95204 0.90648 0.80123 0.93005 0.94084 0.87959 0.87706 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 11.51 113.37 1.30 2.05 16 2 O -0.28 -7.91 10.96 -50.15 -0.55 -8.46 16 3 N -0.37 -10.84 5.05 -513.44 -2.59 -13.43 16 4 C 0.05 1.75 6.16 86.31 0.53 2.29 16 5 C 0.07 2.44 4.93 86.31 0.43 2.87 16 6 N -0.54 -19.44 4.73 -895.68 -4.23 -23.67 16 7 C 0.05 1.91 4.88 86.30 0.42 2.33 16 8 C 0.23 11.57 2.12 29.85 0.06 11.64 16 9 H 0.03 1.57 6.26 -2.39 -0.01 1.55 16 10 O -0.57 -29.64 12.40 -148.98 -1.85 -31.49 16 11 C -0.59 -31.92 8.76 25.60 0.22 -31.69 16 12 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.03 1.55 5.40 84.65 0.46 2.00 16 14 N -0.90 -53.41 12.84 21.44 0.28 -53.13 16 15 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C 0.06 1.68 5.58 86.31 0.48 2.16 16 20 C 0.05 1.33 6.16 86.31 0.53 1.86 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 0.83 8.14 -2.38 -0.02 0.82 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.08 3.31 5.84 -2.39 -0.01 3.30 16 28 H 0.03 1.18 8.08 -2.38 -0.02 1.17 16 29 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.35 16.53 9.04 -74.06 -0.67 15.86 16 31 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -63.90 287.16 -2.08 -65.98 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.40 Total: 23.82 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 4.44 Total: -4.50 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -6.55 Total: -90.23 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -2.40 Total: -39.95 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -63.90 -2.08 -65.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930662023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.381 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds