Wall clock time and date at job start Thu Apr 9 2020 12:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08998 * 109.46910 * 263.57579 * 3 2 1 5 5 C 1.53002 * 109.46818 * 143.57543 * 3 2 1 6 6 N 1.46499 * 109.47497 * 23.58069 * 3 2 1 7 7 C 1.38367 * 120.00270 * 204.99948 * 6 3 2 8 8 C 1.39711 * 119.42622 * 359.97438 * 7 6 3 9 9 C 1.36559 * 119.49193 * 179.97438 * 8 7 6 10 10 C 1.41325 * 118.40816 * 0.04045 * 9 8 7 11 11 C 1.41203 * 120.57085 * 180.25288 * 10 9 8 12 12 H 1.07996 * 119.99826 * 154.59923 * 11 10 9 13 13 C 1.39873 * 119.99948 * 334.60226 * 11 10 9 14 14 N 1.30906 * 119.99751 * 344.00717 * 13 11 10 15 15 Si 1.86797 * 120.00021 * 164.00571 * 13 11 10 16 16 H 1.48502 * 109.47224 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46962 * 120.00011 * 15 13 11 18 18 H 1.48501 * 109.46945 * 240.00332 * 15 13 11 19 19 C 1.40764 * 118.85952 * 359.97438 * 10 9 8 20 20 C 1.50695 * 119.81468 * 179.97438 * 19 10 9 21 21 N 1.31478 * 120.36582 * 359.97438 * 19 10 9 22 22 H 4.18735 * 15.03852 * 359.97438 * 4 2 1 23 23 H 1.08995 * 109.47374 * 179.97438 * 5 3 2 24 24 H 1.09001 * 109.47603 * 300.00215 * 5 3 2 25 25 H 1.09001 * 109.46802 * 59.99940 * 5 3 2 26 26 H 0.97007 * 119.99480 * 24.99400 * 6 3 2 27 27 H 1.07998 * 120.25402 * 359.97438 * 8 7 6 28 28 H 1.07992 * 120.79517 * 180.02562 * 9 8 7 29 29 H 0.96996 * 119.99679 * 179.97438 * 14 13 11 30 30 H 1.09011 * 109.47164 * 89.99433 * 20 19 10 31 31 H 1.08998 * 109.47438 * 209.99641 * 20 19 10 32 32 H 1.09002 * 109.47551 * 329.99680 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.1158 1.0212 5 6 3.1554 1.1616 -0.8565 6 7 3.1350 -1.2650 -0.5525 7 6 4.3898 -1.7330 -0.2045 8 6 5.1806 -0.9886 0.6744 9 6 6.4189 -1.4495 1.0191 10 6 6.8582 -2.6742 0.4673 11 6 8.1283 -3.1959 0.7968 12 1 8.3086 -4.2587 0.7329 13 6 9.1528 -2.3360 1.2060 14 7 9.0518 -1.0487 0.9909 15 14 10.6650 -3.0246 2.0594 16 1 10.5363 -4.4990 2.1814 17 1 11.8748 -2.6981 1.2626 18 1 10.7863 -2.4243 3.4122 19 6 6.0054 -3.3680 -0.4118 20 6 6.4522 -4.6756 -1.0130 21 7 4.8212 -2.8816 -0.7111 22 1 -1.0500 0.0005 -0.0002 23 1 4.2454 1.1625 -0.8562 24 1 2.7921 1.0465 -1.8778 25 1 2.7916 2.1033 -0.4455 26 1 2.5790 -1.7749 -1.1623 27 1 4.8153 -0.0559 1.0780 28 1 7.0476 -0.8914 1.6970 29 1 9.7621 -0.4524 1.2749 30 1 6.1512 -5.4966 -0.3622 31 1 5.9917 -4.8011 -1.9929 32 1 7.5371 -4.6750 -1.1189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163161706.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:00 Heat of formation + Delta-G solvation = 65.142197 kcal Electronic energy + Delta-G solvation = -15167.516000 eV Core-core repulsion = 12707.510006 eV Total energy + Delta-G solvation = -2460.005993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59568 -37.99273 -35.72603 -33.99397 -32.79021 -32.02559 -30.28018 -28.61135 -26.32883 -24.57458 -23.09126 -21.94007 -19.33291 -19.10067 -17.95328 -17.11009 -16.76922 -15.77043 -15.53959 -15.24331 -15.08136 -14.41872 -14.03639 -13.72052 -13.43236 -13.25493 -13.08096 -12.92805 -12.80658 -12.59787 -12.54443 -12.18080 -11.63932 -11.41947 -11.37237 -11.11935 -10.39313 -10.01858 -9.89402 -8.64849 -8.38617 -6.08963 0.88485 1.13550 1.43664 1.56058 1.58103 1.61268 1.87882 2.26810 2.83275 2.88305 3.38279 3.76647 4.07398 4.29032 4.34831 4.57160 4.63931 4.69527 4.80732 4.89434 5.01671 5.04983 5.09930 5.22565 5.27742 5.39257 5.55534 5.67609 5.89117 6.02559 6.48978 6.59925 6.65821 6.85744 6.96788 7.12225 7.87131 8.43476 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039765 B = 0.006339 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.971270 B = 4416.315781 C = 4899.321810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.235 4.235 3 C 0.268 3.732 4 H 0.088 0.912 5 C -0.155 4.155 6 N -0.730 5.730 7 C 0.289 3.711 8 C -0.213 4.213 9 C -0.108 4.108 10 C 0.000 4.000 11 C -0.480 4.480 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.839 5.839 15 Si 0.979 3.021 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.268 1.268 19 C 0.020 3.980 20 C -0.064 4.064 21 N -0.537 5.537 22 H 0.257 0.743 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.394 0.606 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.285 0.715 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 2.779 0.027 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.236 4.236 3 C 0.163 3.837 4 H 0.106 0.894 5 C -0.213 4.213 6 N -0.368 5.368 7 C 0.055 3.945 8 C -0.237 4.237 9 C -0.135 4.135 10 C -0.005 4.005 11 C -0.512 4.512 12 H 0.101 0.899 13 C -0.180 4.180 14 N -0.467 5.467 15 Si 0.801 3.199 16 H -0.180 1.180 17 H -0.195 1.195 18 H -0.193 1.193 19 C -0.119 4.119 20 C -0.121 4.121 21 N -0.254 5.254 22 H 0.273 0.727 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.228 0.772 27 H 0.140 0.860 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.606 2.675 -0.407 9.021 hybrid contribution 0.983 0.280 0.668 1.221 sum -7.623 2.956 0.261 8.180 Atomic orbital electron populations 1.25800 0.96513 0.96774 0.98542 1.23220 0.94520 1.03299 1.02565 1.17530 0.83669 0.84261 0.98207 0.89422 1.22182 1.01205 0.97664 1.00285 1.43764 1.14803 1.24311 1.53946 1.17959 0.88041 0.91402 0.97095 1.21007 0.96369 1.02063 1.04240 1.21315 0.94294 0.97948 0.99957 1.18526 0.95054 0.93719 0.93234 1.19597 0.95062 0.95390 1.41106 0.89926 1.26679 1.02765 0.94649 0.93911 1.69881 1.34619 1.05277 1.36895 0.85190 0.76712 0.79754 0.78256 1.18001 1.19492 1.19334 1.21289 0.90965 1.00012 0.99597 1.20236 1.00791 0.91893 0.99182 1.66416 1.17710 1.13241 1.28005 0.72651 0.92944 0.92191 0.89681 0.77211 0.85979 0.86684 0.90480 0.91998 0.92199 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 19.25 74.32 1.43 -1.82 16 2 C -0.24 -6.29 12.75 31.13 0.40 -5.89 16 3 C 0.27 8.25 2.69 43.19 0.12 8.37 16 4 H 0.09 2.77 6.41 -2.39 -0.02 2.75 16 5 C -0.15 -4.27 9.34 71.98 0.67 -3.60 16 6 N -0.73 -27.32 5.20 -333.00 -1.73 -29.06 16 7 C 0.29 13.34 7.62 133.32 1.02 14.36 16 8 C -0.21 -10.02 8.73 22.23 0.19 -9.82 16 9 C -0.11 -5.73 8.74 22.64 0.20 -5.54 16 10 C 0.00 -0.01 5.58 -21.17 -0.12 -0.13 16 11 C -0.48 -25.45 8.14 23.39 0.19 -25.26 16 12 H 0.08 4.17 6.87 -2.91 -0.02 4.15 16 13 C 0.03 1.64 5.19 85.23 0.44 2.08 16 14 N -0.84 -43.73 10.94 21.82 0.24 -43.49 16 15 Si 0.98 38.07 29.59 68.60 2.03 40.10 16 16 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 18 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 19 C 0.02 1.00 6.86 43.23 0.30 1.29 16 20 C -0.06 -2.72 9.57 71.23 0.68 -2.04 16 21 N -0.54 -26.73 10.29 -179.37 -1.85 -28.58 16 22 H 0.26 2.73 7.80 -4.42 -0.03 2.70 16 23 H 0.05 1.66 7.61 -2.39 -0.02 1.64 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.39 14.16 8.70 -92.70 -0.81 13.35 16 27 H 0.12 5.00 5.99 -2.91 -0.02 4.98 16 28 H 0.12 6.26 6.25 -2.91 -0.02 6.24 16 29 H 0.28 13.46 8.30 -92.71 -0.77 12.69 16 30 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.07 2.86 6.77 -2.39 -0.02 2.84 16 Total: -1.00 -61.82 279.05 4.54 -57.29 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.33 Total: 31.73 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 5.52 Total: -27.99 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.34 Total: -101.13 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -61.82 4.54 -57.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163161706.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.431 kcal (2) G-P(sol) polarization free energy of solvation -61.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds