Wall clock time and date at job start Thu Apr 9 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 5 5 C 1.36943 * 119.99781 * 85.00152 * 4 2 1 6 6 H 1.08002 * 119.99788 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99622 * 180.27904 * 5 4 2 8 8 N 1.31614 * 120.00467 * 359.72375 * 7 5 4 9 9 Si 1.86801 * 119.99700 * 179.72266 * 7 5 4 10 10 H 1.48501 * 109.46896 * 89.99850 * 9 7 5 11 11 H 1.48499 * 109.47039 * 210.00011 * 9 7 5 12 12 H 1.48501 * 109.47275 * 329.99811 * 9 7 5 13 13 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 14 14 C 1.38966 * 119.68630 * 79.71998 * 13 2 1 15 15 C 1.36589 * 120.81405 * 179.76046 * 14 13 2 16 16 C 1.39287 * 119.85506 * 0.51438 * 15 14 13 17 17 N 1.37036 * 133.85658 * 179.74478 * 16 15 14 18 18 H 0.97006 * 125.46238 * 0.03277 * 17 16 15 19 19 N 1.39872 * 109.08057 * 180.02562 * 17 16 15 20 20 C 1.30243 * 110.08763 * 359.97438 * 19 17 16 21 21 C 1.40815 * 119.41358 * 359.74307 * 16 15 14 22 22 C 1.36461 * 119.68654 * 259.99674 * 13 2 1 23 23 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 24 24 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 25 25 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00410 * 265.00478 * 4 2 1 27 27 H 0.96995 * 120.00147 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.59597 * 0.02562 * 14 13 2 29 29 H 1.08008 * 120.07337 * 180.26165 * 15 14 13 30 30 H 1.07991 * 126.11631 * 180.02562 * 20 19 17 31 31 H 1.07999 * 120.18331 * 359.95982 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6062 -0.6631 -3.5106 8 7 2.9192 -1.9402 -3.4517 9 14 2.7773 0.2670 -5.1216 10 1 4.1393 0.8516 -5.2133 11 1 2.5613 -0.6656 -6.2569 12 1 1.7672 1.3543 -5.1751 13 6 2.0324 -0.7105 1.2304 14 6 2.0587 -2.0996 1.2604 15 6 2.5140 -2.7671 2.3617 16 6 2.9486 -2.0522 3.4753 17 7 3.4436 -2.4129 4.7012 18 1 3.5796 -3.3232 5.0076 19 7 3.7214 -1.2581 5.4399 20 6 3.4273 -0.1988 4.7415 21 6 2.9177 -0.6447 3.4488 22 6 2.4518 0.0162 2.3065 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 2.2489 -1.6318 -1.1528 27 1 3.2390 -2.3982 -4.2446 28 1 1.7190 -2.6582 0.4008 29 1 2.5332 -3.8470 2.3705 30 1 3.5405 0.8263 5.0617 31 1 2.4247 1.0954 2.2768 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309009694.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:05 Heat of formation + Delta-G solvation = 93.351051 kcal Electronic energy + Delta-G solvation = -15286.840647 eV Core-core repulsion = 12762.631970 eV Total energy + Delta-G solvation = -2524.208677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03977 -37.78816 -34.74786 -32.43264 -31.74576 -29.67768 -29.03451 -27.73310 -24.13227 -22.73333 -22.34285 -21.61501 -19.72950 -17.66656 -17.32106 -16.12654 -14.84546 -14.81557 -14.63967 -14.32211 -13.81126 -13.33207 -13.13682 -12.80656 -12.54567 -12.03124 -11.57124 -11.09767 -11.07846 -10.83823 -10.81202 -10.61201 -10.27936 -10.09566 -9.96569 -9.65788 -8.93845 -8.39363 -7.66087 -6.96929 -5.76821 -3.05135 1.18171 1.80019 2.64336 2.81509 3.44277 3.49456 3.50907 4.07977 4.59268 4.75270 4.76948 5.01963 5.31028 5.47239 5.58470 5.65941 5.77842 5.89287 6.01729 6.22003 6.25390 6.38323 6.48257 6.58591 6.66000 6.78169 6.97481 7.13224 7.20810 7.42281 7.67159 7.70858 8.41903 9.53197 10.09640 10.44595 11.46086 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.045067 B = 0.005721 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.147227 B = 4892.684751 C = 5044.372575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.210 3.790 3 H 0.056 0.944 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.072 0.928 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.100 4.100 14 C -0.046 4.046 15 C -0.148 4.148 16 C 0.119 3.881 17 N -0.516 5.516 18 H 0.436 0.564 19 N -0.263 5.263 20 C 0.074 3.926 21 C -0.181 4.181 22 C -0.045 4.045 23 H 0.038 0.962 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.384 0.616 27 H 0.255 0.745 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.193 0.807 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 0.936 14.027 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.101 3.899 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.369 4.369 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.102 4.102 14 C -0.066 4.066 15 C -0.170 4.170 16 C 0.004 3.996 17 N -0.232 5.232 18 H 0.279 0.721 19 N -0.076 5.076 20 C -0.124 4.124 21 C -0.188 4.188 22 C -0.066 4.066 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.065 0.935 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.210 0.790 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.176 0.622 14.995 15.054 hybrid contribution 0.020 -0.158 -1.542 1.551 sum -1.157 0.464 13.452 13.510 Atomic orbital electron populations 1.22426 0.98420 1.01081 1.00069 1.19161 0.91942 0.94880 0.83943 0.92634 1.42525 1.78206 1.10698 1.05011 1.19254 1.36578 0.93951 0.87082 0.91042 1.24725 1.02171 0.95963 0.98048 1.69650 1.51037 1.08661 1.28874 0.86196 0.77793 0.78587 0.83655 1.21750 1.21831 1.20734 1.19959 1.00216 0.93780 0.96283 1.20723 0.94984 0.94362 0.96576 1.19784 1.05910 0.99265 0.92001 1.18809 0.98240 0.94544 0.87988 1.45835 1.59057 1.07379 1.10951 0.72075 1.76457 1.19316 0.92057 1.19818 1.25023 0.98069 0.98169 0.91122 1.19856 1.10200 0.92291 0.96488 1.20176 0.96341 0.99524 0.90598 0.94315 0.92504 0.93396 0.78091 0.93513 0.84776 0.86008 0.78979 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.47 37.16 0.35 -2.48 16 2 C 0.21 4.12 3.07 -69.08 -0.21 3.91 16 3 H 0.06 1.09 7.91 -51.93 -0.41 0.68 16 4 N -0.72 -17.68 5.07 -54.55 -0.28 -17.96 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 9 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.10 -1.74 4.92 -104.99 -0.52 -2.25 16 14 C -0.05 -0.77 8.96 -39.91 -0.36 -1.13 16 15 C -0.15 -2.19 10.03 -39.79 -0.40 -2.59 16 16 C 0.12 1.77 7.34 -84.18 -0.62 1.15 16 17 N -0.52 -6.75 7.37 32.36 0.24 -6.51 16 18 H 0.44 4.32 8.96 -182.76 -1.64 2.68 16 19 N -0.26 -3.61 12.55 31.87 0.40 -3.21 16 20 C 0.07 0.94 12.28 -15.15 -0.19 0.76 16 21 C -0.18 -2.69 6.37 -105.20 -0.67 -3.36 16 22 C -0.05 -0.69 9.66 -39.58 -0.38 -1.08 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.38 9.88 6.05 -40.82 -0.25 9.63 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.13 2.35 6.90 -52.49 -0.36 1.99 16 29 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.19 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.13 1.64 8.01 -52.49 -0.42 1.22 16 LS Contribution 270.94 15.07 4.08 4.08 Total: -1.00 -31.45 270.94 -7.83 -39.28 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.74 Total: 8.49 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -3.23 Total: -14.17 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 1.09 Total: -54.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.45 -7.83 -39.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309009694.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.629 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds