Wall clock time and date at job start Thu Apr 9 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 5 5 C 1.36943 * 119.99781 * 85.00152 * 4 2 1 6 6 H 1.08002 * 119.99788 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99622 * 180.27904 * 5 4 2 8 8 N 1.31614 * 120.00467 * 359.72375 * 7 5 4 9 9 Si 1.86801 * 119.99700 * 179.72266 * 7 5 4 10 10 H 1.48501 * 109.46896 * 89.99850 * 9 7 5 11 11 H 1.48499 * 109.47039 * 210.00011 * 9 7 5 12 12 H 1.48501 * 109.47275 * 329.99811 * 9 7 5 13 13 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 14 14 C 1.38966 * 119.68630 * 79.71998 * 13 2 1 15 15 C 1.36589 * 120.81405 * 179.76046 * 14 13 2 16 16 C 1.39287 * 119.85506 * 0.51438 * 15 14 13 17 17 N 1.37036 * 133.85658 * 179.74478 * 16 15 14 18 18 H 0.97006 * 125.46238 * 0.03277 * 17 16 15 19 19 N 1.39872 * 109.08057 * 180.02562 * 17 16 15 20 20 C 1.30243 * 110.08763 * 359.97438 * 19 17 16 21 21 C 1.40815 * 119.41358 * 359.74307 * 16 15 14 22 22 C 1.36461 * 119.68654 * 259.99674 * 13 2 1 23 23 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 24 24 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 25 25 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00410 * 265.00478 * 4 2 1 27 27 H 0.96995 * 120.00147 * 180.02562 * 8 7 5 28 28 H 1.08000 * 119.59597 * 0.02562 * 14 13 2 29 29 H 1.08008 * 120.07337 * 180.26165 * 15 14 13 30 30 H 1.07991 * 126.11631 * 180.02562 * 20 19 17 31 31 H 1.07999 * 120.18331 * 359.95982 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6062 -0.6631 -3.5106 8 7 2.9192 -1.9402 -3.4517 9 14 2.7773 0.2670 -5.1216 10 1 4.1393 0.8516 -5.2133 11 1 2.5613 -0.6656 -6.2569 12 1 1.7672 1.3543 -5.1751 13 6 2.0324 -0.7105 1.2304 14 6 2.0587 -2.0996 1.2604 15 6 2.5140 -2.7671 2.3617 16 6 2.9486 -2.0522 3.4753 17 7 3.4436 -2.4129 4.7012 18 1 3.5796 -3.3232 5.0076 19 7 3.7214 -1.2581 5.4399 20 6 3.4273 -0.1988 4.7415 21 6 2.9177 -0.6447 3.4488 22 6 2.4518 0.0162 2.3065 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 2.2489 -1.6318 -1.1528 27 1 3.2390 -2.3982 -4.2446 28 1 1.7190 -2.6582 0.4008 29 1 2.5332 -3.8470 2.3705 30 1 3.5405 0.8263 5.0617 31 1 2.4247 1.0954 2.2768 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309009694.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:05 Heat of formation + Delta-G solvation = 73.025252 kcal Electronic energy + Delta-G solvation = -15287.722040 eV Core-core repulsion = 12762.631970 eV Total energy + Delta-G solvation = -2525.090069 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14413 -39.10089 -36.37438 -34.00439 -33.15487 -30.86140 -30.66513 -29.13025 -26.00231 -23.94582 -23.79033 -22.66867 -21.11266 -19.28872 -18.78801 -17.40428 -16.49242 -16.33605 -15.74540 -15.65865 -15.20417 -14.84412 -14.43906 -14.25511 -14.09016 -13.47624 -13.22921 -12.79220 -12.57496 -12.33870 -12.28882 -12.13270 -11.84889 -11.58770 -11.51144 -11.20146 -10.93007 -9.57907 -8.99777 -8.79968 -7.89679 -5.17193 0.03894 0.57832 1.50779 1.51970 1.59259 1.60157 1.81736 2.59994 2.87117 3.45257 3.62940 3.79057 3.92486 4.00304 4.08753 4.40305 4.48864 4.54036 4.82781 4.83819 4.94498 5.07011 5.08916 5.24990 5.39346 5.51617 5.55962 5.58583 5.85605 5.95023 6.33173 6.40327 6.65723 7.39384 8.15458 8.39016 9.34217 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.045067 B = 0.005721 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.147227 B = 4892.684751 C = 5044.372575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.208 3.792 3 H 0.057 0.943 4 N -0.735 5.735 5 C -0.235 4.235 6 H 0.079 0.921 7 C -0.077 4.077 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.289 1.289 11 H -0.298 1.298 12 H -0.268 1.268 13 C -0.122 4.122 14 C -0.063 4.063 15 C -0.144 4.144 16 C 0.111 3.889 17 N -0.511 5.511 18 H 0.448 0.552 19 N -0.276 5.276 20 C 0.085 3.915 21 C -0.195 4.195 22 C -0.037 4.037 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.374 0.626 27 H 0.249 0.751 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.233 0.767 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 2.256 15.610 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.100 3.900 3 H 0.075 0.925 4 N -0.376 5.376 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.269 4.269 8 N -0.623 5.623 9 Si 0.799 3.201 10 H -0.217 1.217 11 H -0.225 1.225 12 H -0.193 1.193 13 C -0.124 4.124 14 C -0.084 4.084 15 C -0.166 4.166 16 C -0.004 4.004 17 N -0.228 5.228 18 H 0.294 0.706 19 N -0.090 5.090 20 C -0.113 4.113 21 C -0.203 4.203 22 C -0.057 4.057 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.207 0.793 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.161 0.839 30 H 0.249 0.751 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.161 1.963 16.633 16.788 hybrid contribution 0.004 -0.550 -1.865 1.945 sum -1.157 1.413 14.768 14.880 Atomic orbital electron populations 1.22270 0.96959 1.00871 1.00826 1.19313 0.92819 0.94621 0.83277 0.92515 1.42738 1.78442 1.10462 1.05990 1.19662 1.34597 0.94300 0.88091 0.90355 1.25499 1.03223 0.96832 1.01325 1.69809 1.53024 1.10217 1.29266 0.85184 0.77813 0.77474 0.79582 1.21684 1.22535 1.19290 1.19760 1.02427 0.93981 0.96227 1.20638 0.96440 0.94451 0.96897 1.19907 1.04964 1.00379 0.91376 1.18956 0.98033 0.94983 0.88463 1.45899 1.58501 1.08142 1.10253 0.70632 1.76470 1.19834 0.92427 1.20229 1.25663 0.96309 0.99655 0.89624 1.20153 1.10385 0.92484 0.97299 1.20344 0.94870 1.00623 0.89909 0.91216 0.93931 0.94110 0.79271 0.94196 0.86523 0.83924 0.75097 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.47 71.98 0.68 -4.51 16 2 C 0.21 8.04 3.07 44.24 0.14 8.17 16 3 H 0.06 2.16 7.91 -2.39 -0.02 2.14 16 4 N -0.74 -36.50 5.07 -326.50 -1.65 -38.16 16 5 C -0.23 -12.83 9.93 84.03 0.83 -11.99 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 8 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 9 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 10 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C -0.12 -4.14 4.92 -20.11 -0.10 -4.24 16 14 C -0.06 -2.14 8.96 22.06 0.20 -1.94 16 15 C -0.14 -4.16 10.03 22.14 0.22 -3.94 16 16 C 0.11 3.11 7.34 39.21 0.29 3.40 16 17 N -0.51 -12.21 7.37 -51.54 -0.38 -12.59 16 18 H 0.45 7.95 8.96 -213.46 -1.91 6.04 16 19 N -0.28 -6.79 12.55 -53.09 -0.67 -7.46 16 20 C 0.09 1.87 12.28 86.92 1.07 2.94 16 21 C -0.20 -5.33 6.37 -20.24 -0.13 -5.46 16 22 C -0.04 -1.05 9.66 22.27 0.22 -0.83 16 23 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.37 19.87 6.05 -92.71 -0.56 19.31 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.12 4.29 6.90 -2.91 -0.02 4.27 16 29 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.23 2.94 8.06 -2.92 -0.02 2.91 16 31 H 0.15 3.43 8.01 -2.91 -0.02 3.41 16 Total: -1.00 -67.07 270.94 2.18 -64.90 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -1.31 Total: 26.76 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 3.88 Total: -22.33 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -2.42 Total: -117.27 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.07 2.18 -64.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309009694.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.924 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds