Wall clock time and date at job start Thu Apr 9 2020 12:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38337 * 119.38843 * 2 1 4 4 C 1.38375 * 119.50773 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.81870 * 180.02562 * 4 3 2 6 6 C 1.39962 * 118.36362 * 359.73380 * 4 3 2 7 7 C 1.43202 * 120.61413 * 180.28347 * 6 4 3 8 8 N 4.80314 * 135.14079 * 359.67920 * 3 1 2 9 9 C 1.40551 * 118.77581 * 0.52791 * 6 4 3 10 10 N 1.38409 * 119.82312 * 179.73672 * 9 6 4 11 11 C 1.46498 * 119.99772 * 180.02562 * 10 9 6 12 12 C 1.50700 * 109.46769 * 179.72338 * 11 10 9 13 13 H 1.07997 * 120.00357 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99860 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47186 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46905 * 119.99897 * 16 14 12 19 19 H 1.48494 * 109.47159 * 240.00164 * 16 14 12 20 20 N 1.31881 * 119.39485 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46711 * 270.01437 * 1 2 3 22 22 H 1.08999 * 109.47550 * 30.01877 * 1 2 3 23 23 H 1.09009 * 109.46851 * 150.01836 * 1 2 3 24 24 H 1.08001 * 120.24395 * 0.02562 * 3 2 1 25 25 H 1.08996 * 109.47226 * 90.00064 * 5 4 3 26 26 H 1.09000 * 109.46651 * 210.00155 * 5 4 3 27 27 H 1.09001 * 109.46699 * 329.99835 * 5 4 3 28 28 H 0.97001 * 119.99783 * 359.72080 * 10 9 6 29 29 H 1.09004 * 109.46963 * 299.72132 * 11 10 9 30 30 H 1.08994 * 109.47567 * 59.72284 * 11 10 9 31 31 H 0.96999 * 120.00067 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2053 0.0000 4 6 3.5696 1.2082 0.0005 5 6 4.3390 2.5041 0.0011 6 6 4.2371 -0.0220 0.0068 7 6 5.6681 -0.0752 0.0137 8 7 6.8032 -0.1174 0.0190 9 6 3.4769 -1.2042 0.0009 10 7 4.1147 -2.4326 0.0014 11 6 3.3262 -3.6672 -0.0053 12 6 4.2533 -4.8553 -0.0102 13 1 5.3229 -4.7056 -0.0088 14 6 3.7360 -6.1334 -0.0163 15 7 2.4336 -6.3156 -0.0184 16 14 4.8852 -7.6061 -0.0230 17 1 6.2935 -7.1350 -0.0199 18 1 4.6375 -8.4326 1.1856 19 1 4.6381 -8.4212 -1.2394 20 7 2.1543 -1.1490 0.0005 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6399 2.1372 0.0004 25 1 4.5241 2.8162 1.0289 26 1 5.2899 2.3621 -0.5124 27 1 3.7594 3.2709 -0.5128 28 1 5.0837 -2.4759 0.0017 29 1 2.6967 -3.7012 0.8839 30 1 2.6984 -3.6927 -0.8960 31 1 2.0696 -7.2147 -0.0231 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309071980.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:07 Heat of formation + Delta-G solvation = 48.872197 kcal Electronic energy + Delta-G solvation = -15077.137822 eV Core-core repulsion = 12551.000398 eV Total energy + Delta-G solvation = -2526.137424 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18995 -36.39423 -35.70932 -33.73789 -32.90813 -30.85686 -28.50887 -27.35280 -26.63679 -22.94193 -22.32350 -20.64830 -18.49884 -17.30784 -16.54336 -15.69409 -14.84714 -14.73399 -14.21374 -13.52571 -13.44459 -13.25063 -13.15981 -12.80546 -12.75803 -12.43764 -12.30195 -12.15909 -11.96482 -11.66338 -11.53983 -10.96717 -10.90557 -10.29500 -9.65225 -9.41900 -9.11248 -9.05594 -8.58162 -7.12444 -6.21275 -4.27629 1.04443 1.76813 2.95154 3.22081 3.29604 3.31443 3.33556 3.82244 4.23751 4.24467 4.33748 4.72263 4.74507 5.15642 5.20073 5.37416 5.49016 5.50589 5.60369 5.76404 5.79623 5.90779 6.11904 6.22204 6.41631 6.77283 7.16583 7.46035 7.53508 7.74765 7.80859 7.91572 8.24113 8.62802 8.86871 9.38330 10.88701 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.006757 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.947001 B = 4142.984136 C = 5111.161856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.217 3.783 3 C -0.264 4.264 4 C 0.053 3.947 5 C -0.121 4.121 6 C -0.195 4.195 7 C 0.274 3.726 8 N -0.445 5.445 9 C 0.462 3.538 10 N -0.685 5.685 11 C 0.255 3.745 12 C -0.547 4.547 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.536 5.536 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.133 0.867 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.401 0.599 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 15.018 0.068 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 C -0.287 4.287 4 C 0.043 3.957 5 C -0.177 4.177 6 C -0.208 4.208 7 C -0.040 4.040 8 N -0.122 5.122 9 C 0.218 3.782 10 N -0.307 5.307 11 C 0.134 3.866 12 C -0.586 4.586 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.207 1.207 20 N -0.255 5.255 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.151 0.849 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.237 0.763 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.190 13.718 0.075 13.892 hybrid contribution 0.956 -0.203 0.008 0.977 sum -1.235 13.515 0.083 13.571 Atomic orbital electron populations 1.20795 0.88917 1.03565 1.03264 1.21198 0.96618 0.87465 0.87396 1.21229 0.93034 0.98962 1.15515 1.19914 0.93657 0.92933 0.89172 1.20885 0.99908 0.93864 1.03062 1.16118 0.84929 0.94042 1.25740 1.25359 0.92298 0.93615 0.92716 1.81207 1.11863 1.07357 1.11771 1.18396 0.88063 0.85412 0.86320 1.45637 1.09310 1.03853 1.71850 1.19235 0.91225 0.77902 0.98213 1.21270 0.93152 0.90762 1.53384 0.92027 1.24896 0.95297 0.98978 0.94530 1.69969 1.10816 1.22450 1.48889 0.86370 0.80762 0.82079 0.77818 1.19654 1.20690 1.20684 1.67311 1.06645 1.28893 1.22659 0.90056 0.90651 0.90022 0.84932 0.90140 0.91434 0.90403 0.76317 0.94902 0.94909 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.16 36.01 0.37 -0.82 16 2 C 0.22 3.18 6.78 -82.54 -0.56 2.62 16 3 C -0.26 -3.26 9.41 -39.49 -0.37 -3.63 16 4 C 0.05 0.71 5.95 -103.93 -0.62 0.09 16 5 C -0.12 -1.21 9.67 36.01 0.35 -0.86 16 6 C -0.20 -3.25 5.77 -106.45 -0.61 -3.87 16 7 C 0.27 4.73 12.73 -22.47 -0.29 4.45 16 8 N -0.44 -8.19 18.54 41.84 0.78 -7.42 16 9 C 0.46 9.00 7.49 -155.07 -1.16 7.83 16 10 N -0.68 -14.96 5.61 -61.37 -0.34 -15.30 16 11 C 0.25 6.56 5.44 -5.19 -0.03 6.53 16 12 C -0.55 -15.02 9.28 -34.44 -0.32 -15.34 16 13 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.88 -25.49 13.29 55.43 0.74 -24.76 16 16 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 N -0.54 -10.17 9.45 -8.41 -0.08 -10.25 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 23 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.73 7.20 -51.93 -0.37 0.36 16 27 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.40 8.49 7.16 -40.82 -0.29 8.20 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 281.08 15.07 4.24 4.24 Total: -1.00 -30.12 281.08 -6.62 -36.74 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.58 Total: 1.90 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.34 Total: -1.23 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 1.09 Total: -57.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.12 -6.62 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309071980.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.612 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds