Wall clock time and date at job start Thu Apr 9 2020 12:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.25073 * 2 1 4 4 C 1.36938 * 119.99589 * 299.47004 * 3 2 1 5 5 H 1.07999 * 120.00325 * 359.97438 * 4 3 2 6 6 C 1.38815 * 119.99408 * 179.97438 * 4 3 2 7 7 N 1.31619 * 119.99480 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00486 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47176 * 89.99661 * 8 6 4 10 10 H 1.48498 * 109.47481 * 209.99740 * 8 6 4 11 11 H 1.48501 * 109.46931 * 329.99788 * 8 6 4 12 12 C 1.52735 * 109.25414 * 119.46702 * 2 1 3 13 13 C 1.53337 * 108.37388 * 171.32627 * 12 2 1 14 14 C 1.52739 * 108.37227 * 290.07705 * 13 12 2 15 15 C 1.50638 * 110.58727 * 51.05617 * 14 13 12 16 16 C 1.38917 * 117.74574 * 162.53191 * 15 14 13 17 17 C 1.37932 * 120.54428 * 179.76652 * 16 15 14 18 18 C 1.38259 * 119.77114 * 359.97438 * 17 16 15 19 19 C 1.37928 * 119.77391 * 0.11067 * 18 17 16 20 20 C 1.37650 * 122.57114 * 342.46548 * 15 14 13 21 21 H 1.09005 * 109.47040 * 60.00266 * 1 2 3 22 22 H 1.09007 * 109.46582 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47422 * 300.00244 * 1 2 3 24 24 H 0.96995 * 120.00050 * 119.19212 * 3 2 1 25 25 H 0.97000 * 120.00111 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.68223 * 291.04264 * 12 2 1 27 27 H 1.08998 * 109.68393 * 51.60590 * 12 2 1 28 28 H 1.09000 * 109.68208 * 49.79249 * 13 12 2 29 29 H 1.08993 * 109.68045 * 170.35878 * 13 12 2 30 30 H 1.08996 * 109.25413 * 171.34384 * 14 13 12 31 31 H 1.09000 * 109.24822 * 290.77125 * 14 13 12 32 32 H 1.08004 * 119.72992 * 359.78025 * 16 15 14 33 33 H 1.07998 * 120.11138 * 180.02562 * 17 16 15 34 34 H 1.08002 * 120.11583 * 180.12739 * 18 17 16 35 35 H 1.08002 * 119.72994 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0130 1.3831 0.0000 4 6 1.6879 2.2218 -1.0325 5 1 1.0758 1.8636 -1.8470 6 6 2.1451 3.5325 -1.0322 7 7 1.8331 4.3385 -2.0249 8 14 3.2044 4.1519 0.3761 9 1 4.6359 3.9147 0.0603 10 1 2.9740 5.6066 0.5663 11 1 2.8455 3.4270 1.6214 12 6 2.0336 -0.7093 1.2554 13 6 3.5511 -0.8915 1.1317 14 6 3.8244 -1.9299 0.0454 15 6 3.0817 -1.5825 -1.2183 16 6 3.4937 -2.1892 -2.3981 17 6 2.8515 -1.9166 -3.5879 18 6 1.7886 -1.0326 -3.6075 19 6 1.3791 -0.4278 -2.4375 20 6 2.0261 -0.6994 -1.2385 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 2.5597 1.7059 0.7333 25 1 2.1522 5.2545 -2.0246 26 1 1.8068 -0.1056 2.1341 27 1 1.5529 -1.6835 1.3445 28 1 4.0136 0.0568 0.8577 29 1 3.9578 -1.2381 2.0816 30 1 4.8938 -1.9594 -0.1627 31 1 3.4997 -2.9099 0.3953 32 1 4.3236 -2.8803 -2.3835 33 1 3.1774 -2.3925 -4.5010 34 1 1.2804 -0.8166 -4.5357 35 1 0.5485 0.2623 -2.4535 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309097246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:08 Heat of formation + Delta-G solvation = 12.307994 kcal Electronic energy + Delta-G solvation = -16659.431699 eV Core-core repulsion = 14235.249075 eV Total energy + Delta-G solvation = -2424.182624 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20472 -37.83022 -35.73504 -33.98077 -31.75585 -31.04397 -30.17759 -27.44598 -25.39307 -23.60952 -23.52297 -21.81277 -19.71764 -19.65251 -17.37926 -16.83517 -16.30614 -15.94396 -15.72670 -15.01654 -14.73772 -14.68740 -14.17180 -13.95879 -13.63239 -13.36395 -13.15554 -12.89876 -12.65913 -12.49897 -12.39479 -12.23177 -11.98105 -11.82971 -11.58128 -11.31883 -10.91016 -10.85071 -9.50854 -9.38388 -9.20136 -7.94869 -5.26663 0.63031 0.66297 1.35966 1.39047 1.45828 2.51915 2.97782 3.36413 3.71919 3.83763 3.94928 4.12996 4.17797 4.26537 4.34422 4.40399 4.61635 4.67037 4.76919 4.84479 4.94455 4.99632 5.00434 5.12259 5.17155 5.25214 5.32605 5.42849 5.48399 5.50211 5.72820 5.82182 5.87975 6.04271 6.29733 6.32611 7.15184 7.90720 8.10152 9.26480 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.011103 C = 0.009498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.214536 B = 2521.193534 C = 2947.240162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.226 3.774 3 N -0.739 5.739 4 C -0.209 4.209 5 H 0.072 0.928 6 C -0.070 4.070 7 N -0.988 5.988 8 Si 0.943 3.057 9 H -0.286 1.286 10 H -0.301 1.301 11 H -0.250 1.250 12 C -0.114 4.114 13 C -0.120 4.120 14 C -0.072 4.072 15 C -0.089 4.089 16 C -0.135 4.135 17 C -0.129 4.129 18 C -0.148 4.148 19 C -0.117 4.117 20 C -0.079 4.079 21 H 0.034 0.966 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.364 0.636 25 H 0.253 0.747 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -16.282 5.382 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.138 3.862 3 N -0.381 5.381 4 C -0.340 4.340 5 H 0.090 0.910 6 C -0.260 4.260 7 N -0.640 5.640 8 Si 0.772 3.228 9 H -0.213 1.213 10 H -0.228 1.228 11 H -0.175 1.175 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.108 4.108 15 C -0.090 4.090 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.166 4.166 19 C -0.136 4.136 20 C -0.081 4.081 21 H 0.053 0.947 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.198 0.802 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.103 -16.213 5.231 17.316 hybrid contribution 0.302 1.472 0.038 1.503 sum 3.406 -14.741 5.269 16.020 Atomic orbital electron populations 1.22221 0.96443 1.00765 1.01104 1.18732 0.92688 0.82871 0.91942 1.42963 1.62565 1.08233 1.24374 1.19177 1.23910 0.91434 0.99491 0.90974 1.25380 1.03191 0.97027 1.00404 1.69872 1.52867 1.06618 1.34640 0.85566 0.79056 0.77044 0.81129 1.21292 1.22823 1.17452 1.21783 0.96581 1.01029 0.95763 1.21575 0.95732 0.98905 0.99562 1.20478 0.99541 0.99632 0.91172 1.19984 0.95484 0.96705 0.96802 1.21401 1.00847 1.01034 0.91974 1.21267 0.95959 0.98543 0.98947 1.21252 0.98960 0.98600 0.97794 1.21347 1.00383 0.98195 0.93666 1.20243 0.95928 0.95875 0.96092 0.94733 0.91489 0.92773 0.80183 0.93855 0.91101 0.89060 0.93933 0.88862 0.90030 0.88532 0.83793 0.83972 0.85955 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 7.94 71.98 0.57 -4.75 16 2 C 0.23 8.50 0.74 2.75 0.00 8.50 16 3 N -0.74 -34.16 4.53 -307.24 -1.39 -35.55 16 4 C -0.21 -11.77 9.00 84.03 0.76 -11.01 16 5 H 0.07 4.40 5.04 -2.91 -0.01 4.39 16 6 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 7 N -0.99 -64.49 13.97 21.65 0.30 -64.19 16 8 Si 0.94 46.50 27.74 68.60 1.90 48.40 16 9 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 10 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 11 H -0.25 -11.02 6.51 99.48 0.65 -10.37 16 12 C -0.11 -3.24 4.70 30.62 0.14 -3.10 16 13 C -0.12 -3.15 5.94 30.62 0.18 -2.97 16 14 C -0.07 -1.74 5.67 29.74 0.17 -1.57 16 15 C -0.09 -2.85 5.74 -19.86 -0.11 -2.97 16 16 C -0.13 -3.87 9.61 22.36 0.21 -3.66 16 17 C -0.13 -3.86 10.05 22.20 0.22 -3.64 16 18 C -0.15 -5.25 10.05 22.20 0.22 -5.02 16 19 C -0.12 -4.79 7.72 22.36 0.17 -4.62 16 20 C -0.08 -3.02 4.78 -19.86 -0.09 -3.12 16 21 H 0.03 1.43 5.65 -2.38 -0.01 1.41 16 22 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.36 16.33 4.98 -92.71 -0.46 15.87 16 25 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.09 2.17 8.08 -2.39 -0.02 2.15 16 28 H 0.04 1.36 7.22 -2.39 -0.02 1.34 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.14 3.11 8.05 -2.91 -0.02 3.09 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.10 4.42 4.83 -2.91 -0.01 4.41 16 Total: -1.00 -69.23 271.53 4.29 -64.93 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.56 Total: 28.02 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 2.92 Total: -41.62 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -1.09 Total: -99.74 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.40 kcal Total: -69.23 4.29 -64.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309097246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.241 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds