Wall clock time and date at job start Thu Apr 9 2020 12:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38236 * 119.99586 * 2 1 4 4 C 1.38232 * 119.99539 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00396 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00042 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.87804 * 339.30339 * 6 5 4 8 8 C 1.54329 * 109.88026 * 100.32007 * 6 5 4 9 9 C 1.55151 * 102.94405 * 141.76326 * 8 6 5 10 10 C 1.54912 * 101.58263 * 324.49724 * 9 8 6 11 11 N 1.47022 * 110.01094 * 218.20148 * 6 5 4 12 12 C 1.36936 * 125.64797 * 61.53128 * 11 6 5 13 13 H 1.07999 * 119.99942 * 334.18138 * 12 11 6 14 14 C 1.38812 * 120.00108 * 154.18993 * 12 11 6 15 15 N 1.31622 * 119.99984 * 153.45624 * 14 12 11 16 16 Si 1.86803 * 120.00090 * 333.45736 * 14 12 11 17 17 H 1.48495 * 109.46859 * 95.10200 * 16 14 12 18 18 H 1.48491 * 109.46844 * 215.10174 * 16 14 12 19 19 H 1.48502 * 109.46628 * 335.10352 * 16 14 12 20 20 C 1.38236 * 119.99782 * 0.27858 * 5 4 3 21 21 C 1.38228 * 120.00151 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47120 * 89.99732 * 1 2 3 23 23 H 1.09002 * 109.46787 * 209.99704 * 1 2 3 24 24 H 1.08998 * 109.47185 * 329.99457 * 1 2 3 25 25 H 1.07994 * 120.00240 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.00189 * 180.02562 * 4 3 2 27 27 H 1.09004 * 110.71656 * 260.12760 * 8 6 5 28 28 H 1.08997 * 110.71705 * 23.39817 * 8 6 5 29 29 H 1.08998 * 111.00372 * 82.57085 * 9 8 6 30 30 H 1.09002 * 111.00680 * 206.38787 * 9 8 6 31 31 H 1.09004 * 110.36870 * 155.84589 * 10 9 8 32 32 H 1.09002 * 110.36829 * 278.06315 * 10 9 8 33 33 H 0.97000 * 120.00301 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.00044 * 179.72847 * 20 5 4 35 35 H 1.08000 * 119.99944 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0016 7 1 6.1493 0.9587 -0.3615 8 6 6.3035 -0.2585 1.4297 9 6 7.5387 -1.1656 1.1870 10 6 7.0683 -2.0152 -0.0199 11 7 6.2819 -1.0862 -0.8518 12 6 6.0566 -1.2144 -2.1964 13 1 5.1773 -0.7722 -2.6411 14 6 6.9582 -1.9128 -2.9877 15 7 6.5503 -2.4882 -4.0990 16 14 8.7504 -2.0360 -2.4755 17 1 8.9669 -3.3037 -1.7332 18 1 9.6130 -2.0165 -3.6840 19 1 9.0957 -0.8857 -1.6021 20 6 3.5806 -1.1971 -0.0037 21 6 2.1982 -1.1971 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6582 2.1324 -0.0004 26 1 4.1206 2.1325 0.0010 27 1 6.5990 0.6758 1.9071 28 1 5.5548 -0.7783 2.0274 29 1 8.4151 -0.5713 0.9286 30 1 7.7378 -1.7949 2.0545 31 1 7.9267 -2.3899 -0.5776 32 1 6.4459 -2.8435 0.3187 33 1 7.1804 -2.9759 -4.6522 34 1 4.1206 -2.1324 -0.0073 35 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334318700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:25 Heat of formation + Delta-G solvation = 45.958790 kcal Electronic energy + Delta-G solvation = -16180.451730 eV Core-core repulsion = 13757.728314 eV Total energy + Delta-G solvation = -2422.723416 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.24461 -37.31084 -32.77940 -32.32727 -30.38177 -29.88817 -28.68433 -25.51051 -24.14837 -22.18016 -21.06942 -20.74890 -19.27509 -16.97566 -16.01320 -15.47253 -14.79286 -14.46657 -14.17803 -13.50459 -13.37139 -13.00220 -12.87372 -12.66685 -12.34689 -12.02008 -11.76376 -11.42990 -11.31232 -11.08587 -11.03261 -10.52481 -10.44799 -10.21024 -10.11926 -9.81181 -9.39590 -8.53912 -8.34242 -7.88645 -6.96721 -5.96037 -3.25157 1.89882 1.99202 3.34038 3.49364 3.54162 4.29074 4.56914 4.98922 5.17954 5.25600 5.27842 5.37944 5.46386 5.53295 5.56082 5.68069 5.75812 5.78842 5.99797 6.05399 6.06368 6.16946 6.26486 6.33071 6.37745 6.53560 6.56954 6.67280 6.78289 6.85017 7.00814 7.10681 7.39074 7.60189 7.83467 8.36238 8.89567 9.71970 10.24440 11.20373 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.008592 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.276426 B = 3257.892043 C = 3789.238887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.129 4.129 4 C -0.119 4.119 5 C -0.075 4.075 6 C 0.190 3.810 7 H 0.050 0.950 8 C -0.119 4.119 9 C -0.137 4.137 10 C 0.119 3.881 11 N -0.597 5.597 12 C -0.240 4.240 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.899 5.899 16 Si 0.876 3.124 17 H -0.288 1.288 18 H -0.303 1.303 19 H -0.273 1.273 20 C -0.077 4.077 21 C -0.127 4.127 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.124 0.876 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 4.718 11.459 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.077 4.077 6 C 0.083 3.917 7 H 0.067 0.933 8 C -0.157 4.157 9 C -0.176 4.176 10 C -0.006 4.006 11 N -0.322 5.322 12 C -0.367 4.367 13 H 0.104 0.896 14 C -0.171 4.171 15 N -0.541 5.541 16 Si 0.707 3.293 17 H -0.216 1.216 18 H -0.232 1.232 19 H -0.198 1.198 20 C -0.095 4.095 21 C -0.145 4.145 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.865 4.615 11.192 13.452 hybrid contribution 1.089 -0.139 -0.033 1.098 sum -4.776 4.476 11.159 12.937 Atomic orbital electron populations 1.20713 0.92055 1.01895 1.01797 1.19758 0.95381 0.93459 1.01902 1.20820 0.94170 0.96868 1.02882 1.20956 0.93892 0.97584 1.01290 1.20666 0.97413 0.92663 0.96971 1.19972 0.88340 0.93092 0.90295 0.93272 1.22577 0.97369 0.99446 0.96315 1.22803 0.97732 0.98618 0.98400 1.21881 0.94837 0.92894 0.90944 1.44747 1.60822 1.22083 1.04516 1.18532 1.04853 1.33142 0.80160 0.89561 1.25124 0.97727 0.98658 0.95587 1.69912 1.34276 1.33829 1.16111 0.86930 0.88028 0.77928 0.76424 1.21594 1.23161 1.19818 1.21004 0.93141 0.98653 0.96715 1.20983 0.94517 0.96938 1.02104 0.91709 0.92100 0.92213 0.87072 0.86817 0.91544 0.91394 0.91605 0.91512 0.93951 0.95082 0.92774 0.85781 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.10 -1.63 5.88 -104.62 -0.62 -2.25 16 3 C -0.13 -2.01 9.70 -39.58 -0.38 -2.40 16 4 C -0.12 -2.02 9.68 -39.58 -0.38 -2.40 16 5 C -0.08 -1.44 4.56 -104.62 -0.48 -1.91 16 6 C 0.19 3.81 3.31 -68.10 -0.23 3.58 16 7 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 8 C -0.12 -1.95 6.46 -24.90 -0.16 -2.11 16 9 C -0.14 -2.37 7.08 -24.58 -0.17 -2.54 16 10 C 0.12 2.58 6.32 -2.53 -0.02 2.56 16 11 N -0.60 -14.31 2.05 -163.87 -0.34 -14.64 16 12 C -0.24 -6.80 10.00 -15.06 -0.15 -6.95 16 13 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 14 C 0.03 0.84 5.39 -17.43 -0.09 0.74 16 15 N -0.90 -27.84 13.97 55.49 0.78 -27.07 16 16 Si 0.88 22.59 24.93 -169.99 -4.24 18.35 16 17 H -0.29 -7.23 6.76 56.52 0.38 -6.85 16 18 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 19 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.08 -1.49 9.16 -39.58 -0.36 -1.85 16 21 C -0.13 -2.18 9.70 -39.59 -0.38 -2.56 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 26 H 0.11 1.72 8.05 -52.48 -0.42 1.30 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.06 7.82 -51.93 -0.41 0.65 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 1.00 2.85 -51.93 -0.15 0.86 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.12 2.57 7.67 -52.48 -0.40 2.17 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -30.98 282.97 -7.77 -38.75 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.17 Total: -0.64 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.07 Total: -19.01 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.44 Total: -41.71 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.24 Total: 18.35 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.98 -7.77 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334318700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.709 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds