Wall clock time and date at job start Thu Apr 9 2020 12:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47395 * 240.00324 * 3 2 1 5 5 H 1.48503 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47110 * 120.00369 * 3 2 1 7 7 C 1.38813 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00014 * 194.21059 * 7 2 1 9 9 N 1.37401 * 119.99866 * 14.19809 * 7 2 1 10 10 C 1.45464 * 117.41662 * 204.43483 * 9 7 2 11 11 C 1.53330 * 102.77041 * 93.48163 * 10 9 7 12 12 C 1.53626 * 108.95554 * 62.45004 * 11 10 9 13 13 C 1.50698 * 109.82159 * 50.23380 * 12 11 10 14 14 C 1.39355 * 114.98265 * 99.32066 * 13 12 11 15 15 C 1.37606 * 121.42078 * 180.97304 * 14 13 12 16 16 C 1.38285 * 118.66515 * 359.94045 * 15 14 13 17 17 C 1.37059 * 119.79568 * 359.55779 * 16 15 14 18 18 C 1.37108 * 124.30269 * 279.32378 * 13 12 11 19 19 C 1.50734 * 131.38786 * 357.55811 * 18 13 12 20 20 C 1.45539 * 117.34167 * 24.63854 * 9 7 2 21 21 H 0.96998 * 120.00509 * 359.97438 * 1 2 3 22 22 H 1.08727 * 111.72559 * 213.30710 * 10 9 7 23 23 H 1.09521 * 110.31390 * 335.74321 * 10 9 7 24 24 H 1.09064 * 109.98229 * 302.07256 * 11 10 9 25 25 H 1.09301 * 109.50800 * 182.20076 * 11 10 9 26 26 H 1.08321 * 110.56762 * 287.67645 * 12 11 10 27 27 H 1.09690 * 108.64716 * 168.89731 * 12 11 10 28 28 H 1.08047 * 119.06359 * 0.65481 * 14 13 12 29 29 H 1.07985 * 120.74143 * 179.97438 * 15 14 13 30 30 H 1.08028 * 119.98320 * 179.53987 * 16 15 14 31 31 H 1.08055 * 119.19363 * 180.02562 * 17 16 15 32 32 H 1.09545 * 108.13335 * 122.02495 * 19 18 13 33 33 H 1.09510 * 108.12151 * 237.68774 * 19 18 13 34 34 H 1.09953 * 108.45470 * 31.19869 * 20 9 7 35 35 H 1.08806 * 110.71112 * 273.39068 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0655 -1.2165 0.2291 9 7 1.3548 -2.3738 -0.2929 10 6 1.9244 -3.6075 0.2262 11 6 1.1747 -3.7960 1.5504 12 6 -0.3231 -3.9689 1.2556 13 6 -0.5170 -5.0217 0.1950 14 6 -0.8679 -6.2823 0.6742 15 6 -1.0582 -7.3462 -0.1775 16 6 -0.8955 -7.1456 -1.5360 17 6 -0.5604 -5.9024 -2.0056 18 6 -0.3695 -4.8000 -1.1500 19 6 -0.0501 -3.5468 -1.9243 20 6 0.1483 -2.2809 -1.1015 21 1 -0.4851 0.8400 0.0004 22 1 1.7598 -4.4427 -0.4502 23 1 2.9972 -3.4837 0.4087 24 1 1.3268 -2.9272 2.1918 25 1 1.5516 -4.6867 2.0596 26 1 -0.7614 -3.0275 0.9474 27 1 -0.8253 -4.2995 2.1730 28 1 -0.9874 -6.4246 1.7386 29 1 -1.3296 -8.3185 0.2058 30 1 -1.0323 -7.9678 -2.2233 31 1 -0.4361 -5.7565 -3.0690 32 1 0.8599 -3.7283 -2.5065 33 1 -0.8609 -3.3723 -2.6395 34 1 0.2528 -1.4267 -1.7859 35 1 -0.7216 -2.0952 -0.4748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336291573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:36 Heat of formation + Delta-G solvation = 50.458696 kcal Electronic energy + Delta-G solvation = -16605.110284 eV Core-core repulsion = 14182.581998 eV Total energy + Delta-G solvation = -2422.528285 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.45442 -36.47989 -33.29981 -32.51851 -30.87719 -29.46113 -27.35590 -25.84575 -23.88424 -22.06482 -20.83110 -20.72928 -18.56878 -16.72004 -15.86733 -15.30489 -14.66003 -14.45277 -14.38324 -13.56339 -13.21410 -12.84108 -12.75757 -12.32056 -12.18234 -11.50260 -11.32751 -10.96354 -10.80494 -10.72575 -10.54144 -10.42594 -10.21605 -10.08702 -9.91126 -9.65552 -9.32119 -8.35538 -8.31742 -7.97305 -6.57873 -5.65884 -3.11714 1.75502 1.86052 3.41895 3.47666 3.48839 4.17382 4.56299 5.20423 5.26994 5.34731 5.43668 5.48602 5.57265 5.81053 5.82232 6.00255 6.07879 6.18275 6.28030 6.34320 6.39640 6.52639 6.60769 6.66377 6.79211 6.86836 6.88445 6.92504 7.08065 7.24680 7.36146 7.42854 7.50363 7.86461 7.96572 8.54484 9.35830 10.02851 10.39274 11.37321 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.047077 B = 0.007750 C = 0.007308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.633697 B = 3611.967924 C = 3830.652887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.599 5.599 10 C 0.150 3.850 11 C -0.122 4.122 12 C -0.081 4.081 13 C -0.054 4.054 14 C -0.124 4.124 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.139 4.139 18 C -0.047 4.047 19 C -0.101 4.101 20 C 0.191 3.809 21 H 0.252 0.748 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 -10.955 -1.266 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.323 5.323 10 C 0.024 3.976 11 C -0.162 4.162 12 C -0.118 4.118 13 C -0.054 4.054 14 C -0.142 4.142 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.048 4.048 19 C -0.138 4.138 20 C 0.066 3.934 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.989 -10.848 -1.302 11.106 hybrid contribution 0.392 0.802 -0.011 0.893 sum -1.597 -10.046 -1.313 10.257 Atomic orbital electron populations 1.70044 1.05003 1.25156 1.55200 1.24958 0.95310 0.97989 1.01281 0.86406 0.78832 0.83764 0.77949 1.21290 1.21773 1.21109 1.19386 0.91969 0.85019 1.42348 0.91805 1.43680 1.27971 1.01767 1.58909 1.20908 0.95401 0.89074 0.92244 1.22321 0.94470 0.99354 1.00014 1.20814 0.97845 0.98539 0.94617 1.19536 0.97422 0.95006 0.93456 1.21289 1.00915 0.92694 0.99278 1.20905 1.02256 0.98390 0.93786 1.20719 1.01923 0.96915 0.95572 1.21708 1.01255 0.93298 0.99488 1.20071 0.97011 0.95446 0.92223 1.21129 1.00461 0.94089 0.98160 1.20407 0.89745 0.90954 0.92273 0.93821 0.93656 0.93764 0.91343 0.95299 0.88478 0.93589 0.86887 0.86763 0.87063 0.87239 0.91910 0.91724 0.92930 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.73 10.58 55.49 0.59 -25.14 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.26 -6.94 9.31 -14.84 -0.14 -7.08 16 8 H 0.06 1.71 7.73 -52.49 -0.41 1.30 16 9 N -0.60 -14.61 2.36 -174.46 -0.41 -15.02 16 10 C 0.15 3.19 5.83 -4.43 -0.03 3.16 16 11 C -0.12 -2.44 5.80 -26.24 -0.15 -2.59 16 12 C -0.08 -1.58 5.11 -27.56 -0.14 -1.72 16 13 C -0.05 -0.98 4.61 -104.62 -0.48 -1.46 16 14 C -0.12 -1.95 9.41 -39.40 -0.37 -2.32 16 15 C -0.14 -1.91 10.10 -39.79 -0.40 -2.32 16 16 C -0.13 -1.90 10.01 -39.99 -0.40 -2.30 16 17 C -0.14 -2.20 9.35 -39.02 -0.36 -2.57 16 18 C -0.05 -0.86 4.41 -104.03 -0.46 -1.32 16 19 C -0.10 -1.94 4.36 -28.24 -0.12 -2.06 16 20 C 0.19 4.50 3.77 -4.93 -0.02 4.48 16 21 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 22 H 0.05 0.93 5.43 -52.08 -0.28 0.64 16 23 H 0.04 0.93 7.89 -51.63 -0.41 0.52 16 24 H 0.07 1.52 8.10 -51.89 -0.42 1.09 16 25 H 0.03 0.51 8.17 -51.76 -0.42 0.09 16 26 H 0.10 2.22 5.36 -52.31 -0.28 1.94 16 27 H 0.05 0.80 7.64 -51.54 -0.39 0.41 16 28 H 0.11 1.59 7.70 -52.46 -0.40 1.18 16 29 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.11 1.29 8.06 -52.47 -0.42 0.87 16 31 H 0.11 1.54 7.88 -52.46 -0.41 1.13 16 32 H 0.06 1.19 8.19 -51.62 -0.42 0.77 16 33 H 0.06 1.14 8.18 -51.64 -0.42 0.72 16 34 H 0.05 1.38 7.00 -51.39 -0.36 1.02 16 35 H 0.05 1.29 5.30 -52.04 -0.28 1.01 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -28.07 269.82 -8.84 -36.91 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.89 Total: 0.61 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -3.16 Total: -18.10 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.17 Total: -40.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.07 -8.84 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336291573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.365 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds