Wall clock time and date at job start Thu Apr 9 2020 12:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47395 * 240.00324 * 3 2 1 5 5 H 1.48503 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47110 * 120.00369 * 3 2 1 7 7 C 1.38813 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00014 * 194.21059 * 7 2 1 9 9 N 1.37401 * 119.99866 * 14.19809 * 7 2 1 10 10 C 1.45464 * 117.41662 * 204.43483 * 9 7 2 11 11 C 1.53330 * 102.77041 * 93.48163 * 10 9 7 12 12 C 1.53626 * 108.95554 * 62.45004 * 11 10 9 13 13 C 1.50698 * 109.82159 * 50.23380 * 12 11 10 14 14 C 1.39355 * 114.98265 * 99.32066 * 13 12 11 15 15 C 1.37606 * 121.42078 * 180.97304 * 14 13 12 16 16 C 1.38285 * 118.66515 * 359.94045 * 15 14 13 17 17 C 1.37059 * 119.79568 * 359.55779 * 16 15 14 18 18 C 1.37108 * 124.30269 * 279.32378 * 13 12 11 19 19 C 1.50734 * 131.38786 * 357.55811 * 18 13 12 20 20 C 1.45539 * 117.34167 * 24.63854 * 9 7 2 21 21 H 0.96998 * 120.00509 * 359.97438 * 1 2 3 22 22 H 1.08727 * 111.72559 * 213.30710 * 10 9 7 23 23 H 1.09521 * 110.31390 * 335.74321 * 10 9 7 24 24 H 1.09064 * 109.98229 * 302.07256 * 11 10 9 25 25 H 1.09301 * 109.50800 * 182.20076 * 11 10 9 26 26 H 1.08321 * 110.56762 * 287.67645 * 12 11 10 27 27 H 1.09690 * 108.64716 * 168.89731 * 12 11 10 28 28 H 1.08047 * 119.06359 * 0.65481 * 14 13 12 29 29 H 1.07985 * 120.74143 * 179.97438 * 15 14 13 30 30 H 1.08028 * 119.98320 * 179.53987 * 16 15 14 31 31 H 1.08055 * 119.19363 * 180.02562 * 17 16 15 32 32 H 1.09545 * 108.13335 * 122.02495 * 19 18 13 33 33 H 1.09510 * 108.12151 * 237.68774 * 19 18 13 34 34 H 1.09953 * 108.45470 * 31.19869 * 20 9 7 35 35 H 1.08806 * 110.71112 * 273.39068 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0655 -1.2165 0.2291 9 7 1.3548 -2.3738 -0.2929 10 6 1.9244 -3.6075 0.2262 11 6 1.1747 -3.7960 1.5504 12 6 -0.3231 -3.9689 1.2556 13 6 -0.5170 -5.0217 0.1950 14 6 -0.8679 -6.2823 0.6742 15 6 -1.0582 -7.3462 -0.1775 16 6 -0.8955 -7.1456 -1.5360 17 6 -0.5604 -5.9024 -2.0056 18 6 -0.3695 -4.8000 -1.1500 19 6 -0.0501 -3.5468 -1.9243 20 6 0.1483 -2.2809 -1.1015 21 1 -0.4851 0.8400 0.0004 22 1 1.7598 -4.4427 -0.4502 23 1 2.9972 -3.4837 0.4087 24 1 1.3268 -2.9272 2.1918 25 1 1.5516 -4.6867 2.0596 26 1 -0.7614 -3.0275 0.9474 27 1 -0.8253 -4.2995 2.1730 28 1 -0.9874 -6.4246 1.7386 29 1 -1.3296 -8.3185 0.2058 30 1 -1.0323 -7.9678 -2.2233 31 1 -0.4361 -5.7565 -3.0690 32 1 0.8599 -3.7283 -2.5065 33 1 -0.8609 -3.3723 -2.6395 34 1 0.2528 -1.4267 -1.7859 35 1 -0.7216 -2.0952 -0.4748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336291573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:36 Heat of formation + Delta-G solvation = 36.627981 kcal Electronic energy + Delta-G solvation = -16605.710028 eV Core-core repulsion = 14182.581998 eV Total energy + Delta-G solvation = -2423.128030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81736 -38.13371 -34.94925 -34.09100 -32.62142 -30.93133 -28.98369 -27.46658 -25.76150 -23.32954 -22.51103 -22.20962 -20.18093 -18.66746 -17.17052 -16.85236 -16.51396 -16.02553 -15.78623 -15.20839 -14.90771 -14.30652 -14.27097 -13.81581 -13.64781 -13.20293 -12.93560 -12.72283 -12.47481 -12.36154 -12.24549 -11.98812 -11.91942 -11.85243 -11.62167 -11.43111 -11.01974 -10.40525 -9.52460 -9.27720 -8.59892 -7.74565 -5.23236 0.55448 0.64010 1.47165 1.48879 1.55312 2.54934 2.95971 3.35402 3.74593 3.92615 4.03386 4.14526 4.23850 4.40867 4.43746 4.49491 4.65408 4.73466 4.81410 4.84634 4.90295 4.96168 5.11418 5.18153 5.26332 5.28275 5.45551 5.51404 5.57360 5.70220 5.71775 5.78937 5.98293 6.01895 6.27576 6.45163 7.27348 8.06739 8.34552 9.25285 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.047077 B = 0.007750 C = 0.007308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.633697 B = 3611.967924 C = 3830.652887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.961 3.039 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.268 4.268 8 H 0.063 0.937 9 N -0.608 5.608 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.075 4.075 13 C -0.074 4.074 14 C -0.129 4.129 15 C -0.125 4.125 16 C -0.127 4.127 17 C -0.143 4.143 18 C -0.074 4.074 19 C -0.089 4.089 20 C 0.206 3.794 21 H 0.245 0.755 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 -13.657 -1.518 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.790 3.210 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.399 4.399 8 H 0.081 0.919 9 N -0.332 5.332 10 C 0.025 3.975 11 C -0.154 4.154 12 C -0.112 4.112 13 C -0.074 4.074 14 C -0.147 4.147 15 C -0.143 4.143 16 C -0.145 4.145 17 C -0.161 4.161 18 C -0.074 4.074 19 C -0.127 4.127 20 C 0.081 3.919 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.033 0.967 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.820 -13.575 -1.551 13.784 hybrid contribution 0.332 1.543 0.078 1.580 sum -1.488 -12.032 -1.472 12.213 Atomic orbital electron populations 1.70236 1.06210 1.25203 1.56328 1.25652 0.96065 1.00870 1.01699 0.85440 0.77550 0.79972 0.78047 1.20811 1.22196 1.20459 1.19691 0.92174 0.86291 1.41725 0.91879 1.43871 1.27887 1.02180 1.59256 1.21023 0.95287 0.88178 0.93038 1.22155 0.95088 0.99231 0.98894 1.20639 0.97085 0.97368 0.96119 1.19483 0.99372 0.95620 0.92965 1.21465 1.00606 0.92045 1.00601 1.21338 1.00159 0.99256 0.93560 1.21139 0.99941 0.97000 0.96388 1.21836 1.01092 0.93254 0.99963 1.19978 0.99190 0.95442 0.92815 1.20900 1.01094 0.92923 0.97774 1.20058 0.88472 0.92070 0.91265 0.94521 0.92288 0.93772 0.94384 0.92362 0.92784 0.91905 0.85269 0.83255 0.83681 0.85756 0.91746 0.90515 0.96695 0.96205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 10.58 21.65 0.23 -55.06 16 2 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 3 Si 0.96 45.72 29.58 68.60 2.03 47.75 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.27 -14.89 9.31 83.96 0.78 -14.11 16 8 H 0.06 3.44 7.73 -2.91 -0.02 3.42 16 9 N -0.61 -30.57 2.36 -705.88 -1.67 -32.24 16 10 C 0.15 6.39 5.83 86.68 0.51 6.89 16 11 C -0.11 -4.57 5.80 30.92 0.18 -4.39 16 12 C -0.07 -2.94 5.11 30.06 0.15 -2.78 16 13 C -0.07 -2.60 4.61 -19.86 -0.09 -2.69 16 14 C -0.13 -3.65 9.41 22.39 0.21 -3.44 16 15 C -0.13 -2.94 10.10 22.13 0.22 -2.72 16 16 C -0.13 -3.02 10.01 22.00 0.22 -2.80 16 17 C -0.14 -4.11 9.35 22.63 0.21 -3.89 16 18 C -0.07 -2.61 4.41 -19.48 -0.09 -2.70 16 19 C -0.09 -3.46 4.36 29.62 0.13 -3.33 16 20 C 0.21 10.18 3.77 86.32 0.33 10.51 16 21 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 22 H 0.06 2.37 5.43 -2.53 -0.01 2.35 16 23 H 0.04 1.85 7.89 -2.11 -0.02 1.83 16 24 H 0.04 1.72 8.10 -2.35 -0.02 1.70 16 25 H 0.06 1.98 8.17 -2.23 -0.02 1.96 16 26 H 0.05 2.59 5.36 -2.74 -0.01 2.58 16 27 H 0.06 2.17 7.64 -2.02 -0.02 2.16 16 28 H 0.13 3.16 7.70 -2.89 -0.02 3.14 16 29 H 0.15 2.48 8.06 -2.92 -0.02 2.46 16 30 H 0.15 2.50 8.06 -2.90 -0.02 2.47 16 31 H 0.12 3.12 7.88 -2.88 -0.02 3.09 16 32 H 0.06 2.44 8.19 -2.10 -0.02 2.42 16 33 H 0.08 2.72 8.18 -2.12 -0.02 2.70 16 34 H 0.01 0.82 7.00 -1.88 -0.01 0.81 16 35 H 0.02 1.12 5.30 -2.49 -0.01 1.10 16 Total: -1.00 -62.45 269.82 4.85 -57.60 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.08 Total: 9.67 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 3.18 Total: -27.73 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -1.44 Total: -87.30 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -62.45 4.85 -57.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336291573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.225 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds