Wall clock time and date at job start Thu Apr 9 2020 12:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36723 * 119.99753 * 2 1 4 4 H 1.07996 * 119.99743 * 205.61787 * 3 2 1 5 5 C 1.39123 * 119.99497 * 25.62653 * 3 2 1 6 6 N 1.31317 * 120.00478 * 11.36134 * 5 3 2 7 7 Si 1.86800 * 119.99559 * 191.36095 * 5 3 2 8 8 H 1.48504 * 109.47384 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47381 * 119.99874 * 7 5 3 10 10 H 1.48504 * 109.47158 * 239.99857 * 7 5 3 11 11 C 1.34774 * 120.00428 * 180.02562 * 2 1 3 12 12 O 1.21755 * 120.00446 * 179.97438 * 11 2 1 13 13 C 1.46222 * 119.99851 * 359.97438 * 11 2 1 14 14 C 1.34980 * 120.00557 * 180.02562 * 13 11 2 15 15 C 1.47138 * 120.00792 * 180.02562 * 14 13 11 16 16 C 1.39874 * 120.17898 * 180.02562 * 15 14 13 17 17 C 1.37877 * 119.82557 * 179.97438 * 16 15 14 18 18 C 1.38411 * 120.17522 * 359.97403 * 17 16 15 19 19 C 1.38413 * 120.35137 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.17576 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46675 * 264.92211 * 1 2 3 22 22 H 1.08994 * 109.47431 * 24.91933 * 1 2 3 23 23 H 1.08995 * 109.46928 * 144.92695 * 1 2 3 24 24 H 0.97006 * 120.00056 * 180.02562 * 6 5 3 25 25 H 1.08008 * 120.00129 * 0.02562 * 13 11 2 26 26 H 1.08008 * 119.99377 * 359.97438 * 14 13 11 27 27 H 1.08005 * 120.08348 * 359.94822 * 16 15 14 28 28 H 1.07999 * 119.91385 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.82396 * 179.74267 * 18 17 16 30 30 H 1.07997 * 119.91426 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.08960 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1841 0.0000 4 1 3.1489 1.2300 -0.4044 5 6 1.5555 2.3296 0.5211 6 7 0.4414 2.2368 1.2101 7 14 2.3439 3.9996 0.2406 8 1 3.5835 3.8337 -0.5601 9 1 1.3958 4.8782 -0.4904 10 1 2.6796 4.6148 1.5500 11 6 2.1390 -1.1671 -0.0005 12 8 3.3565 -1.1671 -0.0010 13 6 1.4079 -2.4335 -0.0005 14 6 2.0828 -3.6025 -0.0005 15 6 1.3472 -4.8768 -0.0011 16 6 2.0429 -6.0903 -0.0006 17 6 1.3463 -7.2801 -0.0006 18 6 -0.0379 -7.2759 -0.0006 19 6 -0.7336 -6.0794 -0.0011 20 6 -0.0516 -4.8811 -0.0011 21 1 -0.3633 -0.0910 1.0237 22 1 -0.3634 0.9319 -0.4330 23 1 -0.3633 -0.8410 -0.5905 24 1 0.0277 3.0356 1.5732 25 1 0.3278 -2.4336 -0.0005 26 1 3.1629 -3.6024 -0.0009 27 1 3.1229 -6.0951 -0.0006 28 1 1.8820 -8.2179 -0.0006 29 1 -0.5778 -8.2112 -0.0048 30 1 -1.8136 -6.0844 -0.0015 31 1 -0.5959 -3.9483 -0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491353538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:06 Heat of formation + Delta-G solvation = 13.411268 kcal Electronic energy + Delta-G solvation = -14962.940215 eV Core-core repulsion = 12402.972338 eV Total energy + Delta-G solvation = -2559.967877 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10843 -38.28682 -34.83030 -33.44998 -31.69521 -30.89656 -29.21206 -26.42470 -24.93717 -23.30564 -22.37587 -20.55657 -18.04577 -17.20825 -16.85066 -15.99186 -15.08464 -14.83409 -14.53692 -13.97816 -13.86554 -13.32780 -13.11036 -12.82862 -12.67731 -11.90215 -11.64442 -11.41520 -11.29255 -11.04264 -10.93527 -10.67921 -10.36142 -10.34544 -9.91114 -9.08940 -8.89291 -8.43574 -7.90312 -7.68834 -6.42659 -3.91739 0.92230 1.48455 2.48628 3.14643 3.21822 3.29042 3.96674 4.08111 4.44813 4.77369 4.93403 5.00273 5.11142 5.13953 5.26887 5.52694 5.57505 5.65729 5.95206 6.05567 6.17634 6.33093 6.43518 6.52338 6.56000 6.79116 6.95168 7.03627 7.10050 7.14716 7.47277 8.10915 8.44460 9.13742 9.34939 9.97929 10.61393 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.061296 B = 0.005011 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.687048 B = 5586.568687 C = 5978.419570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.430 5.430 3 C -0.300 4.300 4 H 0.101 0.899 5 C 0.030 3.970 6 N -0.873 5.873 7 Si 0.929 3.071 8 H -0.266 1.266 9 H -0.279 1.279 10 H -0.280 1.280 11 C 0.460 3.540 12 O -0.597 6.597 13 C -0.151 4.151 14 C -0.093 4.093 15 C -0.043 4.043 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.116 4.116 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.270 0.730 25 H 0.118 0.882 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 -12.786 -2.117 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.146 5.146 3 C -0.428 4.428 4 H 0.119 0.881 5 C -0.175 4.175 6 N -0.511 5.511 7 Si 0.756 3.244 8 H -0.190 1.190 9 H -0.205 1.205 10 H -0.206 1.206 11 C 0.251 3.749 12 O -0.484 6.484 13 C -0.173 4.173 14 C -0.114 4.114 15 C -0.043 4.043 16 C -0.130 4.130 17 C -0.139 4.139 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.134 4.134 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.136 -12.562 -2.023 13.379 hybrid contribution 0.004 0.878 0.056 0.880 sum -4.133 -11.684 -1.966 12.549 Atomic orbital electron populations 1.21567 0.81200 1.00206 1.00679 1.43540 1.05635 1.05017 1.60457 1.19783 1.01405 0.84420 1.37197 0.88096 1.25464 0.96548 1.00477 0.94968 1.69955 1.18973 1.30095 1.32123 0.85811 0.79317 0.80978 0.78344 1.19024 1.20508 1.20560 1.17977 0.87615 0.83854 0.85438 1.90631 1.13524 1.87230 1.57052 1.23371 0.99823 0.93693 1.00369 1.22089 0.99930 0.89966 0.99428 1.19195 0.93099 0.93318 0.98670 1.21360 0.99946 0.91662 1.00044 1.21039 0.94362 0.97804 1.00736 1.21168 0.94389 0.97855 1.01491 1.21058 0.99763 0.92442 1.00440 1.21476 0.93676 0.98393 0.99900 0.92804 0.90521 0.95267 0.91992 0.86409 0.85206 0.85767 0.86233 0.86457 0.86145 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.40 8.28 59.85 0.50 2.90 16 2 N -0.43 -11.33 3.00 -123.87 -0.37 -11.70 16 3 C -0.30 -8.45 9.21 -15.04 -0.14 -8.58 16 4 H 0.10 2.97 7.46 -52.49 -0.39 2.58 16 5 C 0.03 0.78 5.06 -17.44 -0.09 0.70 16 6 N -0.87 -23.14 10.83 55.50 0.60 -22.54 16 7 Si 0.93 20.56 29.57 -169.99 -5.03 15.53 16 8 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 C 0.46 11.81 7.55 -13.06 -0.10 11.71 16 12 O -0.60 -17.32 15.95 5.14 0.08 -17.24 16 13 C -0.15 -3.06 8.60 -37.53 -0.32 -3.38 16 14 C -0.09 -1.69 9.46 -37.13 -0.35 -2.04 16 15 C -0.04 -0.65 5.87 -105.06 -0.62 -1.27 16 16 C -0.11 -1.49 9.80 -39.10 -0.38 -1.87 16 17 C -0.12 -1.38 10.03 -39.65 -0.40 -1.78 16 18 C -0.13 -1.44 10.04 -39.45 -0.40 -1.83 16 19 C -0.12 -1.40 10.03 -39.65 -0.40 -1.80 16 20 C -0.12 -1.62 9.41 -39.10 -0.37 -1.98 16 21 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 22 H 0.08 1.79 6.79 -51.93 -0.35 1.44 16 23 H 0.03 0.54 6.39 -51.93 -0.33 0.21 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.12 2.06 4.33 -52.48 -0.23 1.84 16 26 H 0.13 2.47 7.52 -52.48 -0.39 2.08 16 27 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.66 6.17 -52.49 -0.32 1.33 16 LS Contribution 271.07 15.07 4.08 4.08 Total: -1.00 -31.41 271.07 -6.95 -38.36 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.26 Total: 2.75 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -3.06 Total: -9.24 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.23 Total: -34.24 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.08 Total: -17.24 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.41 -6.95 -38.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.767 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds