Wall clock time and date at job start Thu Apr 9 2020 12:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36723 * 119.99753 * 2 1 4 4 H 1.07996 * 119.99743 * 205.61787 * 3 2 1 5 5 C 1.39123 * 119.99497 * 25.62653 * 3 2 1 6 6 N 1.31317 * 120.00478 * 11.36134 * 5 3 2 7 7 Si 1.86800 * 119.99559 * 191.36095 * 5 3 2 8 8 H 1.48504 * 109.47384 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47381 * 119.99874 * 7 5 3 10 10 H 1.48504 * 109.47158 * 239.99857 * 7 5 3 11 11 C 1.34774 * 120.00428 * 180.02562 * 2 1 3 12 12 O 1.21755 * 120.00446 * 179.97438 * 11 2 1 13 13 C 1.46222 * 119.99851 * 359.97438 * 11 2 1 14 14 C 1.34980 * 120.00557 * 180.02562 * 13 11 2 15 15 C 1.47138 * 120.00792 * 180.02562 * 14 13 11 16 16 C 1.39874 * 120.17898 * 180.02562 * 15 14 13 17 17 C 1.37877 * 119.82557 * 179.97438 * 16 15 14 18 18 C 1.38411 * 120.17522 * 359.97403 * 17 16 15 19 19 C 1.38413 * 120.35137 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.17576 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46675 * 264.92211 * 1 2 3 22 22 H 1.08994 * 109.47431 * 24.91933 * 1 2 3 23 23 H 1.08995 * 109.46928 * 144.92695 * 1 2 3 24 24 H 0.97006 * 120.00056 * 180.02562 * 6 5 3 25 25 H 1.08008 * 120.00129 * 0.02562 * 13 11 2 26 26 H 1.08008 * 119.99377 * 359.97438 * 14 13 11 27 27 H 1.08005 * 120.08348 * 359.94822 * 16 15 14 28 28 H 1.07999 * 119.91385 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.82396 * 179.74267 * 18 17 16 30 30 H 1.07997 * 119.91426 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.08960 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1841 0.0000 4 1 3.1489 1.2300 -0.4044 5 6 1.5555 2.3296 0.5211 6 7 0.4414 2.2368 1.2101 7 14 2.3439 3.9996 0.2406 8 1 3.5835 3.8337 -0.5601 9 1 1.3958 4.8782 -0.4904 10 1 2.6796 4.6148 1.5500 11 6 2.1390 -1.1671 -0.0005 12 8 3.3565 -1.1671 -0.0010 13 6 1.4079 -2.4335 -0.0005 14 6 2.0828 -3.6025 -0.0005 15 6 1.3472 -4.8768 -0.0011 16 6 2.0429 -6.0903 -0.0006 17 6 1.3463 -7.2801 -0.0006 18 6 -0.0379 -7.2759 -0.0006 19 6 -0.7336 -6.0794 -0.0011 20 6 -0.0516 -4.8811 -0.0011 21 1 -0.3633 -0.0910 1.0237 22 1 -0.3634 0.9319 -0.4330 23 1 -0.3633 -0.8410 -0.5905 24 1 0.0277 3.0356 1.5732 25 1 0.3278 -2.4336 -0.0005 26 1 3.1629 -3.6024 -0.0009 27 1 3.1229 -6.0951 -0.0006 28 1 1.8820 -8.2179 -0.0006 29 1 -0.5778 -8.2112 -0.0048 30 1 -1.8136 -6.0844 -0.0015 31 1 -0.5959 -3.9483 -0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491353538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:06 Heat of formation + Delta-G solvation = -5.216073 kcal Electronic energy + Delta-G solvation = -14963.747957 eV Core-core repulsion = 12402.972338 eV Total energy + Delta-G solvation = -2560.775619 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53305 -39.82633 -36.79624 -34.87234 -33.68902 -31.86051 -30.51649 -28.30194 -26.75637 -24.72517 -23.41299 -21.96337 -19.67319 -18.97481 -18.50673 -17.37538 -16.78425 -16.16569 -15.94681 -15.81305 -15.45247 -14.59104 -14.27579 -14.19123 -13.94165 -13.71011 -13.42544 -13.18144 -12.92774 -12.66887 -12.35820 -12.14237 -12.06652 -11.75910 -11.22738 -11.05341 -10.48075 -9.84168 -9.74369 -9.13301 -8.41820 -6.03411 -0.31430 0.53508 1.13137 1.39585 1.41890 1.54360 2.24946 2.46990 2.99626 3.05440 3.16541 3.79806 3.89452 4.12693 4.20751 4.31519 4.39647 4.59472 4.61624 4.66147 4.95959 5.04311 5.13650 5.25682 5.28445 5.36638 5.40542 5.62339 5.62695 5.77915 6.07594 6.11444 6.45228 7.10522 7.38106 7.98845 8.61416 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.061296 B = 0.005011 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.687048 B = 5586.568687 C = 5978.419570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.449 5.449 3 C -0.347 4.347 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.890 5.890 7 Si 0.995 3.005 8 H -0.273 1.273 9 H -0.261 1.261 10 H -0.273 1.273 11 C 0.451 3.549 12 O -0.646 6.646 13 C -0.186 4.186 14 C -0.052 4.052 15 C -0.081 4.081 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.121 4.121 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.277 0.723 25 H 0.146 0.854 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 -15.028 -2.195 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.164 5.164 3 C -0.475 4.475 4 H 0.089 0.911 5 C -0.203 4.203 6 N -0.528 5.528 7 Si 0.817 3.183 8 H -0.198 1.198 9 H -0.185 1.185 10 H -0.199 1.199 11 C 0.244 3.756 12 O -0.537 6.537 13 C -0.206 4.206 14 C -0.073 4.073 15 C -0.081 4.081 16 C -0.133 4.133 17 C -0.142 4.142 18 C -0.133 4.133 19 C -0.142 4.142 20 C -0.139 4.139 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.163 0.837 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.880 -14.820 -2.097 16.081 hybrid contribution 0.520 1.225 0.092 1.334 sum -5.360 -13.595 -2.005 14.750 Atomic orbital electron populations 1.21530 0.79169 1.01088 1.00758 1.43748 1.07006 1.04750 1.60934 1.19704 1.01314 0.86414 1.40085 0.91067 1.26222 0.96945 1.03249 0.93920 1.70012 1.19497 1.31351 1.31894 0.84868 0.78398 0.76619 0.78383 1.19800 1.18528 1.19859 1.18856 0.87424 0.85491 0.83789 1.90568 1.15819 1.88275 1.59061 1.23059 1.00775 0.91411 1.05390 1.22263 0.99382 0.91191 0.94501 1.19118 0.93948 0.92337 1.02721 1.21597 1.00664 0.91798 0.99229 1.21425 0.94950 0.98141 0.99674 1.21684 0.94415 0.99029 0.98209 1.21424 1.01315 0.91826 0.99644 1.21651 0.93069 0.99726 0.99418 0.93558 0.91917 0.91385 0.91273 0.83670 0.86863 0.85062 0.83195 0.82976 0.83389 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.35 8.28 127.77 1.06 6.40 16 2 N -0.45 -24.61 3.00 -664.00 -1.99 -26.60 16 3 C -0.35 -20.54 9.21 84.14 0.77 -19.76 16 4 H 0.07 4.51 7.46 -2.91 -0.02 4.48 16 5 C 0.00 -0.03 5.06 84.98 0.43 0.40 16 6 N -0.89 -47.69 10.83 21.69 0.23 -47.46 16 7 Si 0.99 42.86 29.57 68.60 2.03 44.89 16 8 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 C 0.45 24.28 7.55 86.32 0.65 24.93 16 12 O -0.65 -39.81 15.95 -4.52 -0.07 -39.88 16 13 C -0.19 -7.63 8.60 23.60 0.20 -7.43 16 14 C -0.05 -1.92 9.46 23.86 0.23 -1.70 16 15 C -0.08 -2.37 5.87 -20.15 -0.12 -2.49 16 16 C -0.11 -2.79 9.80 22.58 0.22 -2.57 16 17 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16 18 C -0.12 -1.96 10.04 22.35 0.22 -1.74 16 19 C -0.12 -2.42 10.03 22.23 0.22 -2.19 16 20 C -0.12 -3.06 9.41 22.58 0.21 -2.84 16 21 H 0.05 2.14 7.85 -2.39 -0.02 2.12 16 22 H 0.06 2.98 6.79 -2.39 -0.02 2.97 16 23 H 0.07 2.50 6.39 -2.39 -0.02 2.48 16 24 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 25 H 0.15 5.01 4.33 -2.91 -0.01 5.00 16 26 H 0.11 4.49 7.52 -2.91 -0.02 4.47 16 27 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 28 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 30 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.13 3.11 6.17 -2.91 -0.02 3.09 16 Total: -1.00 -71.63 271.07 5.66 -65.97 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.13 Total: 14.15 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.33 Total: -11.07 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.76 Total: -74.06 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.07 Total: -39.88 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -71.63 5.66 -65.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.756 kcal (2) G-P(sol) polarization free energy of solvation -71.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds