Wall clock time and date at job start Thu Apr 9 2020 12:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38410 * 119.82723 * 2 1 4 4 C 1.37879 * 120.17254 * 179.97438 * 3 2 1 5 5 C 1.39876 * 119.82338 * 0.02562 * 4 3 2 6 6 C 1.47147 * 120.17255 * 179.97438 * 5 4 3 7 7 C 1.34976 * 119.99893 * 136.61845 * 6 5 4 8 8 C 1.46225 * 120.00031 * 348.84820 * 7 6 5 9 9 O 1.21760 * 120.00234 * 353.23115 * 8 7 6 10 10 N 1.34778 * 120.00103 * 173.21756 * 8 7 6 11 11 C 1.36711 * 120.00310 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00118 * 0.02562 * 11 10 8 13 13 C 1.39126 * 120.00036 * 180.02562 * 11 10 8 14 14 N 1.31313 * 119.99963 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99709 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47434 * 60.00235 * 15 13 11 17 17 H 1.48510 * 109.46887 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47515 * 299.99715 * 15 13 11 19 19 C 1.39875 * 119.65565 * 0.27094 * 5 4 3 20 20 C 1.37878 * 119.81781 * 359.42986 * 19 5 4 21 21 H 1.08995 * 109.47448 * 89.99967 * 1 2 3 22 22 H 1.08999 * 109.47232 * 210.00640 * 1 2 3 23 23 H 1.09002 * 109.46845 * 330.00051 * 1 2 3 24 24 H 1.08000 * 119.90929 * 359.97438 * 3 2 1 25 25 H 1.08000 * 120.08682 * 179.97438 * 4 3 2 26 26 H 1.08000 * 119.99524 * 316.62742 * 6 5 4 27 27 H 1.07996 * 119.99841 * 169.12245 * 7 6 5 28 28 H 0.97002 * 119.99476 * 0.02562 * 10 8 7 29 29 H 0.97006 * 119.99920 * 180.02562 * 14 13 11 30 30 H 1.07995 * 120.08778 * 179.72805 * 19 5 4 31 31 H 1.08005 * 119.91336 * 180.29807 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2771 -0.0002 0.0005 6 6 5.7486 -0.0003 0.0005 7 6 6.4234 -0.8500 0.8034 8 6 5.7129 -1.5934 1.8430 9 8 4.5397 -1.3567 2.0668 10 7 6.3566 -2.5408 2.5533 11 6 5.6923 -3.2362 3.5249 12 1 4.6515 -3.0267 3.7230 13 6 6.3569 -4.2138 4.2585 14 7 7.6225 -4.4682 4.0180 15 14 5.4493 -5.1635 5.5865 16 1 4.3021 -5.8869 4.9816 17 1 6.3738 -6.1407 6.2158 18 1 4.9504 -4.2185 6.6177 19 6 3.5741 -1.2094 -0.0058 20 6 2.1953 -1.2009 0.0000 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6511 2.1336 -0.0004 25 1 4.1100 2.1468 0.0001 26 1 6.2886 0.6795 -0.6418 27 1 7.4888 -0.9774 0.6809 28 1 7.2913 -2.7292 2.3751 29 1 8.0859 -5.1501 4.5292 30 1 4.1098 -2.1472 -0.0102 31 1 1.6509 -2.1337 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491421770.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:11 Heat of formation + Delta-G solvation = 3.477463 kcal Electronic energy + Delta-G solvation = -15271.954060 eV Core-core repulsion = 12711.555421 eV Total energy + Delta-G solvation = -2560.398639 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.09279 -37.79658 -34.44799 -33.25855 -31.41207 -30.66088 -30.24564 -26.57955 -25.01371 -22.39392 -21.84565 -20.40805 -18.55231 -17.71012 -16.52508 -15.19577 -14.79913 -14.71688 -14.28236 -13.89315 -13.50999 -13.27529 -13.06991 -12.69897 -12.59204 -11.99032 -11.79598 -11.61246 -11.35782 -11.13792 -10.58661 -10.50368 -10.45709 -10.30597 -9.63085 -9.13894 -8.53619 -8.21914 -7.94214 -7.22476 -6.56431 -3.86431 1.40084 2.11693 2.52770 3.18451 3.19675 3.24375 4.09757 4.36987 4.44934 5.08844 5.27439 5.29953 5.30847 5.41714 5.56727 5.67985 5.80774 5.88980 5.99444 6.07123 6.19300 6.28591 6.59328 6.64584 6.76287 6.92043 7.08632 7.17070 7.33616 7.42223 7.64646 7.99392 8.54462 9.08879 9.46598 10.06092 10.60169 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.006692 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.411350 B = 4182.819668 C = 4882.285932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.109 4.109 5 C -0.048 4.048 6 C -0.088 4.088 7 C -0.169 4.169 8 C 0.444 3.556 9 O -0.583 6.583 10 N -0.542 5.542 11 C -0.292 4.292 12 H 0.107 0.893 13 C 0.023 3.977 14 N -0.889 5.889 15 Si 0.933 3.067 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.018 4.018 20 C -0.136 4.136 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.393 0.607 29 H 0.276 0.724 30 H 0.113 0.887 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 6.430 -7.903 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.161 4.161 4 C -0.127 4.127 5 C -0.049 4.049 6 C -0.109 4.109 7 C -0.190 4.190 8 C 0.234 3.766 9 O -0.471 6.471 10 N -0.174 5.174 11 C -0.422 4.422 12 H 0.124 0.876 13 C -0.180 4.180 14 N -0.529 5.529 15 Si 0.760 3.240 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.036 4.036 20 C -0.154 4.154 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.226 0.774 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.866 6.386 -7.604 11.533 hybrid contribution 0.462 -0.645 0.795 1.124 sum -5.404 5.741 -6.808 10.417 Atomic orbital electron populations 1.20730 0.92200 1.02212 1.01420 1.19800 0.95246 0.93375 1.00696 1.20634 0.94038 0.96750 1.04645 1.21051 0.93943 0.96725 1.01007 1.18762 0.92590 0.93125 1.00383 1.21986 0.92567 0.97807 0.98541 1.23176 0.99646 0.99146 0.97062 1.17919 0.87980 0.84496 0.86222 1.90715 1.15942 1.69514 1.70914 1.41978 1.13194 1.30977 1.31260 1.19773 0.97383 1.14127 1.10964 0.87561 1.25387 0.95748 0.97794 0.99114 1.69567 1.09318 1.32792 1.41199 0.85872 0.78887 0.79025 0.80256 1.19693 1.20785 1.19696 1.21054 0.93462 0.97000 0.92117 1.20743 0.94283 0.96850 1.03536 0.91916 0.91955 0.92159 0.87195 0.86980 0.86158 0.86568 0.77379 0.91431 0.86849 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.00 36.01 0.36 -1.02 16 2 C -0.09 -1.49 5.89 -104.49 -0.62 -2.11 16 3 C -0.14 -2.29 9.68 -39.65 -0.38 -2.67 16 4 C -0.11 -1.85 9.80 -39.10 -0.38 -2.23 16 5 C -0.05 -0.91 4.54 -105.06 -0.48 -1.39 16 6 C -0.09 -1.51 9.81 -37.13 -0.36 -1.88 16 7 C -0.17 -3.21 9.91 -37.53 -0.37 -3.59 16 8 C 0.44 10.69 6.73 -13.05 -0.09 10.60 16 9 O -0.58 -15.59 11.73 5.14 0.06 -15.53 16 10 N -0.54 -13.79 5.27 -12.31 -0.06 -13.85 16 11 C -0.29 -8.06 9.68 -15.05 -0.15 -8.20 16 12 H 0.11 3.07 7.15 -52.49 -0.38 2.69 16 13 C 0.02 0.61 5.50 -17.44 -0.10 0.51 16 14 N -0.89 -23.74 13.04 55.50 0.72 -23.01 16 15 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 C -0.02 -0.35 6.61 -39.10 -0.26 -0.61 16 20 C -0.14 -2.48 9.68 -39.65 -0.38 -2.86 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 23 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 24 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.39 9.56 7.87 -40.82 -0.32 9.24 16 29 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.11 2.39 7.02 -52.49 -0.37 2.03 16 31 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -30.24 273.68 -6.96 -37.21 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -3.58 Total: 10.83 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.21 Total: -15.45 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.66 Total: -36.87 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.06 Total: -15.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.24 -6.96 -37.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491421770.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.683 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds