Wall clock time and date at job start Thu Apr 9 2020 12:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47170 * 284.68078 * 3 2 1 5 5 C 1.36934 * 119.99846 * 270.00153 * 4 3 2 6 6 H 1.08000 * 120.00315 * 142.56117 * 5 4 3 7 7 C 1.38813 * 120.00310 * 322.56419 * 5 4 3 8 8 N 1.31623 * 120.00399 * 157.50518 * 7 5 4 9 9 Si 1.86801 * 119.99882 * 337.50474 * 7 5 4 10 10 H 1.48501 * 109.47109 * 95.35164 * 9 7 5 11 11 H 1.48498 * 109.47258 * 215.35517 * 9 7 5 12 12 H 1.48502 * 109.46897 * 335.35362 * 9 7 5 13 13 C 1.46496 * 120.00199 * 90.00289 * 4 3 2 14 14 C 1.50707 * 109.47007 * 272.30409 * 13 4 3 15 15 C 1.38596 * 120.80320 * 90.03838 * 14 13 4 16 16 N 1.32331 * 119.10701 * 179.72483 * 15 14 13 17 17 C 1.31794 * 120.81781 * 0.27682 * 16 15 14 18 18 C 1.50693 * 119.12282 * 180.02562 * 17 16 15 19 19 N 1.31792 * 121.75504 * 0.02562 * 17 16 15 20 20 C 1.32336 * 120.81913 * 359.97438 * 19 17 16 21 21 H 4.40648 * 5.51362 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.47028 * 164.67975 * 3 2 1 23 23 H 1.08995 * 109.47419 * 44.67839 * 3 2 1 24 24 H 0.97002 * 119.99946 * 179.97438 * 8 7 5 25 25 H 1.08991 * 109.47285 * 152.30664 * 13 4 3 26 26 H 1.09001 * 109.47320 * 32.29937 * 13 4 3 27 27 H 1.08000 * 120.44278 * 359.97438 * 15 14 13 28 28 H 1.09003 * 109.47674 * 90.00055 * 18 17 16 29 29 H 1.09010 * 109.47254 * 210.00282 * 18 17 16 30 30 H 1.09000 * 109.47362 * 329.99928 * 18 17 16 31 31 H 1.08000 * 120.44754 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3492 1.3361 5 6 3.3623 0.6345 2.2611 6 1 3.1307 0.4615 3.3017 7 6 3.8908 1.8543 1.8613 8 7 3.7091 2.9255 2.6042 9 14 4.8600 1.9754 0.2690 10 1 3.9596 2.4170 -0.8262 11 1 5.9600 2.9595 0.4327 12 1 5.4309 0.6459 -0.0652 13 6 3.3794 -1.7513 1.6827 14 6 2.1084 -2.3685 2.2069 15 6 1.2122 -2.9852 1.3482 16 7 0.1091 -3.5211 1.8455 17 6 -0.1439 -3.4685 3.1378 18 6 -1.4115 -4.0917 3.6629 19 7 0.6821 -2.8853 3.9831 20 6 1.8047 -2.3278 3.5586 21 1 -1.0500 -0.0002 0.0000 22 1 3.0089 0.9919 -0.2715 23 1 3.0098 -0.7299 -0.7225 24 1 4.0787 3.7778 2.3250 25 1 4.1529 -1.8066 2.4485 26 1 3.7072 -2.2930 0.7954 27 1 1.4133 -3.0314 0.2882 28 1 -1.2237 -5.1336 3.9225 29 1 -1.7424 -3.5504 4.5494 30 1 -2.1853 -4.0419 2.8969 31 1 2.4771 -1.8512 4.2566 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491681117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:14 Heat of formation + Delta-G solvation = 128.764739 kcal Electronic energy + Delta-G solvation = -15673.388998 eV Core-core repulsion = 13150.715974 eV Total energy + Delta-G solvation = -2522.673024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61275 -36.65145 -33.34453 -33.25825 -32.32976 -31.31288 -29.08702 -26.50613 -25.40912 -24.15925 -22.36492 -20.80047 -18.22221 -17.26958 -16.52660 -16.25207 -15.48958 -14.86328 -14.66948 -14.08441 -13.34198 -13.18760 -13.03001 -12.87050 -12.58568 -12.44482 -12.23482 -11.72894 -11.13830 -10.88613 -10.60905 -10.53812 -10.34944 -10.01444 -9.51957 -9.28264 -8.94741 -8.79137 -8.52887 -7.16697 -6.14270 -3.60949 1.34348 1.53609 3.18913 3.35134 3.38231 3.51022 3.61425 4.13056 4.32005 4.37881 4.54237 4.99815 5.11906 5.16788 5.25909 5.35976 5.41873 5.63678 5.66127 5.68221 6.03206 6.04613 6.09559 6.28828 6.37915 6.51155 6.67876 6.86371 7.40436 7.84053 8.20217 8.39204 8.49305 8.75184 9.51669 9.86547 11.00200 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.035113 B = 0.008128 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.236516 B = 3444.155660 C = 3661.693508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.164 4.164 3 C 0.225 3.775 4 N -0.586 5.586 5 C -0.282 4.282 6 H 0.080 0.920 7 C 0.043 3.957 8 N -0.889 5.889 9 Si 0.874 3.126 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.264 1.264 13 C 0.189 3.811 14 C -0.190 4.190 15 C 0.155 3.845 16 N -0.524 5.524 17 C 0.292 3.708 18 C -0.079 4.079 19 N -0.523 5.523 20 C 0.164 3.836 21 H 0.202 0.798 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.266 0.734 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -11.246 -2.778 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.167 4.167 3 C 0.100 3.900 4 N -0.305 5.305 5 C -0.410 4.410 6 H 0.098 0.902 7 C -0.159 4.159 8 N -0.528 5.528 9 Si 0.703 3.297 10 H -0.212 1.212 11 H -0.224 1.224 12 H -0.188 1.188 13 C 0.061 3.939 14 C -0.196 4.196 15 C -0.011 4.011 16 N -0.238 5.238 17 C 0.024 3.976 18 C -0.137 4.137 19 N -0.238 5.238 20 C -0.002 4.002 21 H 0.219 0.781 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.173 0.827 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.349 -11.448 -2.368 12.473 hybrid contribution 0.909 0.877 -1.164 1.718 sum -3.440 -10.571 -3.532 11.664 Atomic orbital electron populations 1.24625 0.95650 1.03518 1.03027 1.24819 0.95789 0.98062 0.98024 1.18555 0.82665 1.00388 0.88393 1.44097 1.73517 1.01630 1.11303 1.18698 1.38637 0.92778 0.90838 0.90244 1.25428 0.97439 0.95565 0.97463 1.69883 1.44104 0.99043 1.39792 0.86983 0.80580 0.78090 0.84033 1.21153 1.22417 1.18802 1.19835 0.90450 0.84637 0.98940 1.22759 1.02327 0.98657 0.95884 1.22918 0.88049 0.90125 1.00008 1.68137 1.20302 1.20026 1.15346 1.23039 0.95774 0.93021 0.85737 1.20447 0.91525 1.00219 1.01518 1.68197 1.04552 1.10777 1.40227 1.23117 0.92089 0.90841 0.94200 0.78112 0.90363 0.91421 0.92392 0.90286 0.92664 0.82687 0.90346 0.90100 0.90197 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.87 19.25 29.55 0.57 -4.30 16 2 C -0.16 -3.45 12.86 -37.12 -0.48 -3.93 16 3 C 0.22 4.70 5.03 -6.83 -0.03 4.67 16 4 N -0.59 -12.91 2.02 -177.96 -0.36 -13.27 16 5 C -0.28 -7.41 9.90 -15.06 -0.15 -7.56 16 6 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 7 C 0.04 1.18 5.30 -17.43 -0.09 1.09 16 8 N -0.89 -26.23 13.97 55.49 0.78 -25.45 16 9 Si 0.87 20.67 25.05 -169.99 -4.26 16.41 16 10 H -0.28 -6.60 6.67 56.52 0.38 -6.22 16 11 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.19 3.35 5.88 -5.19 -0.03 3.32 16 14 C -0.19 -3.34 5.34 -104.35 -0.56 -3.90 16 15 C 0.16 2.63 10.35 -17.20 -0.18 2.45 16 16 N -0.52 -9.06 10.33 -10.73 -0.11 -9.18 16 17 C 0.29 4.92 7.64 -157.20 -1.20 3.72 16 18 C -0.08 -0.97 10.32 36.00 0.37 -0.60 16 19 N -0.52 -9.48 10.33 -10.73 -0.11 -9.59 16 20 C 0.16 2.96 11.01 -17.20 -0.19 2.77 16 21 H 0.20 3.25 7.80 -54.09 -0.42 2.83 16 22 H 0.08 1.79 3.26 -51.93 -0.17 1.62 16 23 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.08 1.35 7.98 -51.93 -0.41 0.94 16 26 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 27 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.17 2.82 8.06 -52.49 -0.42 2.39 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -31.04 277.24 -5.38 -36.42 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.52 Total: 2.74 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.97 Total: -2.26 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.19 Total: -57.49 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.26 Total: 16.41 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.04 -5.38 -36.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491681117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.185 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds