Wall clock time and date at job start Thu Apr 9 2020 12:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47170 * 284.68078 * 3 2 1 5 5 C 1.36934 * 119.99846 * 270.00153 * 4 3 2 6 6 H 1.08000 * 120.00315 * 142.56117 * 5 4 3 7 7 C 1.38813 * 120.00310 * 322.56419 * 5 4 3 8 8 N 1.31623 * 120.00399 * 157.50518 * 7 5 4 9 9 Si 1.86801 * 119.99882 * 337.50474 * 7 5 4 10 10 H 1.48501 * 109.47109 * 95.35164 * 9 7 5 11 11 H 1.48498 * 109.47258 * 215.35517 * 9 7 5 12 12 H 1.48502 * 109.46897 * 335.35362 * 9 7 5 13 13 C 1.46496 * 120.00199 * 90.00289 * 4 3 2 14 14 C 1.50707 * 109.47007 * 272.30409 * 13 4 3 15 15 C 1.38596 * 120.80320 * 90.03838 * 14 13 4 16 16 N 1.32331 * 119.10701 * 179.72483 * 15 14 13 17 17 C 1.31794 * 120.81781 * 0.27682 * 16 15 14 18 18 C 1.50693 * 119.12282 * 180.02562 * 17 16 15 19 19 N 1.31792 * 121.75504 * 0.02562 * 17 16 15 20 20 C 1.32336 * 120.81913 * 359.97438 * 19 17 16 21 21 H 4.40648 * 5.51362 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.47028 * 164.67975 * 3 2 1 23 23 H 1.08995 * 109.47419 * 44.67839 * 3 2 1 24 24 H 0.97002 * 119.99946 * 179.97438 * 8 7 5 25 25 H 1.08991 * 109.47285 * 152.30664 * 13 4 3 26 26 H 1.09001 * 109.47320 * 32.29937 * 13 4 3 27 27 H 1.08000 * 120.44278 * 359.97438 * 15 14 13 28 28 H 1.09003 * 109.47674 * 90.00055 * 18 17 16 29 29 H 1.09010 * 109.47254 * 210.00282 * 18 17 16 30 30 H 1.09000 * 109.47362 * 329.99928 * 18 17 16 31 31 H 1.08000 * 120.44754 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3492 1.3361 5 6 3.3623 0.6345 2.2611 6 1 3.1307 0.4615 3.3017 7 6 3.8908 1.8543 1.8613 8 7 3.7091 2.9255 2.6042 9 14 4.8600 1.9754 0.2690 10 1 3.9596 2.4170 -0.8262 11 1 5.9600 2.9595 0.4327 12 1 5.4309 0.6459 -0.0652 13 6 3.3794 -1.7513 1.6827 14 6 2.1084 -2.3685 2.2069 15 6 1.2122 -2.9852 1.3482 16 7 0.1091 -3.5211 1.8455 17 6 -0.1439 -3.4685 3.1378 18 6 -1.4115 -4.0917 3.6629 19 7 0.6821 -2.8853 3.9831 20 6 1.8047 -2.3278 3.5586 21 1 -1.0500 -0.0002 0.0000 22 1 3.0089 0.9919 -0.2715 23 1 3.0098 -0.7299 -0.7225 24 1 4.0787 3.7778 2.3250 25 1 4.1529 -1.8066 2.4485 26 1 3.7072 -2.2930 0.7954 27 1 1.4133 -3.0314 0.2882 28 1 -1.2237 -5.1336 3.9225 29 1 -1.7424 -3.5504 4.5494 30 1 -2.1853 -4.0419 2.8969 31 1 2.4771 -1.8512 4.2566 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491681117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:14 Heat of formation + Delta-G solvation = 109.259060 kcal Electronic energy + Delta-G solvation = -15674.234828 eV Core-core repulsion = 13150.715974 eV Total energy + Delta-G solvation = -2523.518854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93711 -38.29000 -34.75942 -34.61445 -34.12461 -32.96049 -30.39150 -28.16429 -26.96283 -25.50819 -23.90759 -22.31520 -19.92043 -18.66000 -18.20892 -17.58277 -17.29221 -16.30716 -16.09220 -15.62239 -14.96342 -14.74265 -14.54132 -14.40076 -14.09355 -13.63678 -13.26493 -13.20288 -12.76199 -12.52382 -12.45454 -11.97218 -11.82900 -11.71518 -11.18174 -10.92411 -10.70152 -10.13963 -10.07231 -8.98247 -8.21951 -5.66008 0.01420 0.18018 1.33596 1.45214 1.56158 1.92627 2.03398 2.42284 2.79249 3.07752 3.14239 3.26484 3.55574 3.69116 3.81377 4.01938 4.08073 4.44769 4.53132 4.60343 4.67241 4.73099 4.80993 4.96935 5.07024 5.16025 5.19896 5.57950 5.88537 6.06653 6.15683 6.81528 6.89954 7.16925 7.53647 7.93046 8.96784 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.035113 B = 0.008128 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.236516 B = 3444.155660 C = 3661.693508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.200 4.200 3 C 0.220 3.780 4 N -0.595 5.595 5 C -0.265 4.265 6 H 0.041 0.959 7 C -0.017 4.017 8 N -0.946 5.946 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.308 1.308 12 H -0.236 1.236 13 C 0.188 3.812 14 C -0.197 4.197 15 C 0.159 3.841 16 N -0.531 5.531 17 C 0.283 3.717 18 C -0.076 4.076 19 N -0.542 5.542 20 C 0.147 3.853 21 H 0.229 0.771 22 H 0.059 0.941 23 H 0.110 0.890 24 H 0.264 0.736 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.178 0.822 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 -13.144 -4.718 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.202 4.202 3 C 0.096 3.904 4 N -0.315 5.315 5 C -0.394 4.394 6 H 0.058 0.942 7 C -0.214 4.214 8 N -0.588 5.588 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.237 1.237 12 H -0.158 1.158 13 C 0.062 3.938 14 C -0.204 4.204 15 C -0.008 4.008 16 N -0.246 5.246 17 C 0.016 3.984 18 C -0.135 4.135 19 N -0.256 5.256 20 C -0.018 4.018 21 H 0.246 0.754 22 H 0.076 0.924 23 H 0.128 0.872 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.195 0.805 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.855 -13.404 -4.322 14.897 hybrid contribution 0.919 1.376 -0.487 1.725 sum -3.936 -12.028 -4.809 13.539 Atomic orbital electron populations 1.25359 0.96539 1.02122 1.01566 1.25029 0.96429 0.99401 0.99360 1.18660 0.82875 1.00600 0.88311 1.44156 1.73945 1.02379 1.11009 1.18556 1.36897 0.93710 0.90278 0.94175 1.26115 0.98767 0.95173 1.01377 1.70030 1.46402 0.99721 1.42696 0.85907 0.78508 0.78957 0.79836 1.20535 1.23702 1.15831 1.20012 0.90594 0.82597 1.00616 1.22675 1.02576 0.99492 0.95631 1.23285 0.87532 0.89073 1.00890 1.68254 1.20454 1.20360 1.15497 1.23890 0.96607 0.92208 0.85720 1.20597 0.89776 1.01109 1.01977 1.68250 1.04891 1.11581 1.40913 1.23236 0.92486 0.91210 0.94895 0.75406 0.92371 0.87237 0.92740 0.90319 0.88842 0.80474 0.88211 0.89547 0.88895 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.64 19.25 74.32 1.43 -7.21 16 2 C -0.20 -7.93 12.86 31.12 0.40 -7.53 16 3 C 0.22 8.60 5.03 84.57 0.43 9.02 16 4 N -0.59 -25.28 2.02 -716.94 -1.45 -26.73 16 5 C -0.26 -14.11 9.90 84.03 0.83 -13.28 16 6 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 7 C -0.02 -0.96 5.30 84.86 0.45 -0.51 16 8 N -0.95 -57.74 13.97 21.65 0.30 -57.44 16 9 Si 0.94 42.57 25.05 68.60 1.72 44.29 16 10 H -0.28 -12.20 6.67 99.48 0.66 -11.53 16 11 H -0.31 -14.40 7.11 99.48 0.71 -13.70 16 12 H -0.24 -9.47 7.11 99.48 0.71 -8.76 16 13 C 0.19 6.27 5.88 85.64 0.50 6.77 16 14 C -0.20 -6.65 5.34 -19.69 -0.11 -6.75 16 15 C 0.16 4.96 10.35 84.70 0.88 5.83 16 16 N -0.53 -17.10 10.33 -187.86 -1.94 -19.05 16 17 C 0.28 9.03 7.64 138.75 1.06 10.09 16 18 C -0.08 -1.70 10.32 71.23 0.74 -0.97 16 19 N -0.54 -19.27 10.33 -187.85 -1.94 -21.21 16 20 C 0.15 5.32 11.01 84.70 0.93 6.25 16 21 H 0.23 6.64 7.80 -4.42 -0.03 6.60 16 22 H 0.06 2.53 3.26 -2.39 -0.01 2.52 16 23 H 0.11 3.32 7.91 -2.39 -0.02 3.30 16 24 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.08 2.60 7.98 -2.39 -0.02 2.58 16 26 H 0.09 2.43 7.88 -2.39 -0.02 2.41 16 27 H 0.18 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.16 5.71 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -67.71 277.24 5.31 -62.40 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 1.08 Total: 16.03 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 7.54 Total: 1.72 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.03 Total: -124.43 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.72 Total: 44.29 kcal Total: -67.71 5.31 -62.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491681117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.658 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds