Wall clock time and date at job start Thu Apr 9 2020 12:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32830 * 119.99873 * 2 1 4 4 C 1.47590 * 119.99796 * 5.24088 * 3 2 1 5 5 C 1.39790 * 120.05681 * 314.65640 * 4 3 2 6 6 C 1.37652 * 119.93732 * 179.74046 * 5 4 3 7 7 C 1.39308 * 120.05964 * 0.53573 * 6 5 4 8 8 N 1.39112 * 119.94338 * 179.69444 * 7 6 5 9 9 C 1.34773 * 119.99939 * 207.42684 * 8 7 6 10 10 O 1.21790 * 120.00064 * 4.88640 * 9 8 7 11 11 C 1.41625 * 119.99871 * 184.88591 * 9 8 7 12 12 H 1.07998 * 120.00074 * 0.02562 * 11 9 8 13 13 C 1.40142 * 120.00162 * 179.97438 * 11 9 8 14 14 N 1.30635 * 119.99605 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00182 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46954 * 60.00325 * 15 13 11 17 17 H 1.48493 * 109.47211 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47359 * 300.00444 * 15 13 11 19 19 C 1.39308 * 120.11533 * 359.72429 * 7 6 5 20 20 C 1.37653 * 120.05888 * 0.02562 * 19 7 6 21 21 H 1.09003 * 109.47130 * 184.85507 * 1 2 3 22 22 H 1.09000 * 109.47000 * 304.85320 * 1 2 3 23 23 H 1.09007 * 109.47194 * 64.85587 * 1 2 3 24 24 H 1.08002 * 120.00300 * 179.97438 * 2 1 3 25 25 H 1.07998 * 119.99857 * 185.24324 * 3 2 1 26 26 H 1.08003 * 120.03253 * 359.97438 * 5 4 3 27 27 H 1.08003 * 119.96797 * 180.23698 * 6 5 4 28 28 H 0.97000 * 120.00052 * 27.43018 * 8 7 6 29 29 H 0.97001 * 119.99331 * 179.97438 * 14 13 11 30 30 H 1.07998 * 119.97052 * 179.97438 * 19 7 6 31 31 H 1.07999 * 120.02806 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1711 1.1504 0.0000 4 6 1.4377 2.4258 0.1168 5 6 0.2868 2.6440 -0.6461 6 6 -0.3983 3.8324 -0.5313 7 6 0.0606 4.8215 0.3358 8 7 -0.6301 6.0241 0.4452 9 6 0.0246 7.1474 0.8000 10 8 1.2345 7.1291 0.9382 11 6 -0.6944 8.3490 1.0122 12 1 -1.7673 8.3650 0.8901 13 6 -0.0137 9.5169 1.3817 14 7 1.2841 9.4973 1.5299 15 14 -0.9620 11.1016 1.6623 16 1 -1.9489 10.9012 2.7536 17 1 -0.0176 12.1832 2.0408 18 1 -1.6733 11.4803 0.4150 19 6 1.2103 4.6086 1.0931 20 6 1.8963 3.4201 0.9859 21 1 -0.3633 -1.0240 0.0870 22 1 -0.3633 0.5873 0.8433 23 1 -0.3634 0.4367 -0.9303 24 1 2.0471 -0.9353 0.0004 25 1 3.2477 1.1523 -0.0855 26 1 -0.0666 1.8795 -1.3221 27 1 -1.2897 4.0000 -1.1176 28 1 -1.5830 6.0541 0.2661 29 1 1.7553 10.3058 1.7853 30 1 1.5642 5.3772 1.7643 31 1 2.7878 3.2557 1.5730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568945680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:25 Heat of formation + Delta-G solvation = 2.960172 kcal Electronic energy + Delta-G solvation = -15139.416639 eV Core-core repulsion = 12578.995568 eV Total energy + Delta-G solvation = -2560.421070 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.26532 -37.41373 -34.91123 -33.03752 -32.37589 -30.35064 -28.91425 -27.13812 -25.88852 -22.23651 -21.91010 -19.89060 -18.83506 -17.53864 -16.28613 -15.63651 -15.45345 -14.74357 -14.15728 -13.86375 -13.62565 -13.14768 -12.89065 -12.63853 -12.40700 -11.91981 -11.76424 -11.50374 -11.36775 -11.10682 -10.69582 -10.68369 -10.43097 -10.38909 -9.46864 -8.99800 -8.62322 -8.33177 -7.69162 -6.80766 -6.39811 -4.93898 1.65793 2.10934 2.70153 3.05457 3.10659 3.12557 3.95732 4.27191 4.58021 4.69241 5.12062 5.27111 5.33829 5.51054 5.52907 5.69282 5.86312 5.94505 6.01912 6.13247 6.35723 6.38731 6.60721 6.71162 6.87534 7.10721 7.16770 7.20511 7.28727 7.51858 7.85309 8.02586 8.21487 8.76699 9.25676 10.34902 10.55067 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.071667 B = 0.005206 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.602898 B = 5377.052911 C = 5669.133734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.173 4.173 3 C -0.102 4.102 4 C -0.122 4.122 5 C -0.090 4.090 6 C -0.189 4.189 7 C 0.201 3.799 8 N -0.697 5.697 9 C 0.541 3.459 10 O -0.564 6.564 11 C -0.538 4.538 12 H 0.070 0.930 13 C 0.088 3.912 14 N -0.746 5.746 15 Si 0.914 3.086 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.141 4.141 20 C -0.084 4.084 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.392 0.608 29 H 0.274 0.726 30 H 0.149 0.851 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -11.356 -2.075 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.191 4.191 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.108 4.108 6 C -0.211 4.211 7 C 0.100 3.900 8 N -0.338 5.338 9 C 0.351 3.649 10 O -0.448 6.448 11 C -0.573 4.573 12 H 0.088 0.912 13 C -0.135 4.135 14 N -0.374 5.374 15 Si 0.738 3.262 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.162 4.162 20 C -0.103 4.103 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.125 0.875 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.225 0.775 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.968 -11.111 -1.888 11.441 hybrid contribution -0.877 0.806 -0.052 1.192 sum -2.845 -10.305 -1.939 10.865 Atomic orbital electron populations 1.21074 0.93500 1.01216 1.02487 1.23172 0.96206 0.97054 1.02718 1.21650 0.98590 0.91848 0.99877 1.18791 0.97338 0.94788 1.01447 1.21049 0.94609 0.96469 0.98657 1.20738 1.03201 0.95528 1.01647 1.18149 0.93184 0.86334 0.92287 1.44153 1.11423 1.06914 1.71314 1.17026 0.87582 0.82084 0.78250 1.90627 1.14066 1.84310 1.55820 1.20012 0.95053 0.93820 1.48458 0.91188 1.25768 0.94673 1.00272 0.92826 1.70001 1.08042 1.28764 1.30567 0.86320 0.79906 0.80360 0.79619 1.19019 1.20304 1.19044 1.21516 0.96377 0.97335 1.00943 1.21056 0.98982 0.92473 0.97811 0.93100 0.91415 0.91119 0.87488 0.87119 0.86117 0.86736 0.77523 0.91524 0.83401 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.45 36.01 0.30 -1.12 16 2 C -0.17 -2.07 10.32 -36.17 -0.37 -2.45 16 3 C -0.10 -1.41 9.75 -37.63 -0.37 -1.77 16 4 C -0.12 -2.04 5.25 -104.92 -0.55 -2.59 16 5 C -0.09 -1.45 8.06 -39.22 -0.32 -1.76 16 6 C -0.19 -3.38 9.93 -39.40 -0.39 -3.77 16 7 C 0.20 4.32 6.39 -83.76 -0.54 3.79 16 8 N -0.70 -15.88 5.32 -12.44 -0.07 -15.94 16 9 C 0.54 15.02 7.35 -14.97 -0.11 14.91 16 10 O -0.56 -17.55 12.13 5.11 0.06 -17.49 16 11 C -0.54 -14.59 9.31 -37.58 -0.35 -14.94 16 12 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 13 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 14 N -0.75 -21.39 11.73 55.56 0.65 -20.74 16 15 Si 0.91 19.19 29.56 -169.99 -5.02 14.17 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 C -0.14 -3.12 8.67 -39.40 -0.34 -3.46 16 20 C -0.08 -1.58 9.78 -39.21 -0.38 -1.96 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.85 7.61 -51.93 -0.40 0.46 16 23 H 0.07 0.77 5.50 -51.93 -0.29 0.48 16 24 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 25 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.12 1.63 5.33 -52.48 -0.28 1.35 16 27 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.39 7.60 8.74 -40.82 -0.36 7.24 16 29 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 30 H 0.15 3.76 5.93 -52.49 -0.31 3.45 16 31 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 268.41 15.07 4.04 4.04 Total: -1.00 -31.56 268.41 -7.13 -38.69 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -3.29 Total: 10.16 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.51 Total: -12.89 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.59 Total: -36.68 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.06 Total: -17.49 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.56 -7.13 -38.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568945680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.654 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds