Wall clock time and date at job start Thu Apr 9 2020 12:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32830 * 119.99873 * 2 1 4 4 C 1.47590 * 119.99796 * 5.24088 * 3 2 1 5 5 C 1.39790 * 120.05681 * 314.65640 * 4 3 2 6 6 C 1.37652 * 119.93732 * 179.74046 * 5 4 3 7 7 C 1.39308 * 120.05964 * 0.53573 * 6 5 4 8 8 N 1.39112 * 119.94338 * 179.69444 * 7 6 5 9 9 C 1.34773 * 119.99939 * 207.42684 * 8 7 6 10 10 O 1.21790 * 120.00064 * 4.88640 * 9 8 7 11 11 C 1.41625 * 119.99871 * 184.88591 * 9 8 7 12 12 H 1.07998 * 120.00074 * 0.02562 * 11 9 8 13 13 C 1.40142 * 120.00162 * 179.97438 * 11 9 8 14 14 N 1.30635 * 119.99605 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00182 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46954 * 60.00325 * 15 13 11 17 17 H 1.48493 * 109.47211 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47359 * 300.00444 * 15 13 11 19 19 C 1.39308 * 120.11533 * 359.72429 * 7 6 5 20 20 C 1.37653 * 120.05888 * 0.02562 * 19 7 6 21 21 H 1.09003 * 109.47130 * 184.85507 * 1 2 3 22 22 H 1.09000 * 109.47000 * 304.85320 * 1 2 3 23 23 H 1.09007 * 109.47194 * 64.85587 * 1 2 3 24 24 H 1.08002 * 120.00300 * 179.97438 * 2 1 3 25 25 H 1.07998 * 119.99857 * 185.24324 * 3 2 1 26 26 H 1.08003 * 120.03253 * 359.97438 * 5 4 3 27 27 H 1.08003 * 119.96797 * 180.23698 * 6 5 4 28 28 H 0.97000 * 120.00052 * 27.43018 * 8 7 6 29 29 H 0.97001 * 119.99331 * 179.97438 * 14 13 11 30 30 H 1.07998 * 119.97052 * 179.97438 * 19 7 6 31 31 H 1.07999 * 120.02806 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1711 1.1504 0.0000 4 6 1.4377 2.4258 0.1168 5 6 0.2868 2.6440 -0.6461 6 6 -0.3983 3.8324 -0.5313 7 6 0.0606 4.8215 0.3358 8 7 -0.6301 6.0241 0.4452 9 6 0.0246 7.1474 0.8000 10 8 1.2345 7.1291 0.9382 11 6 -0.6944 8.3490 1.0122 12 1 -1.7673 8.3650 0.8901 13 6 -0.0137 9.5169 1.3817 14 7 1.2841 9.4973 1.5299 15 14 -0.9620 11.1016 1.6623 16 1 -1.9489 10.9012 2.7536 17 1 -0.0176 12.1832 2.0408 18 1 -1.6733 11.4803 0.4150 19 6 1.2103 4.6086 1.0931 20 6 1.8963 3.4201 0.9859 21 1 -0.3633 -1.0240 0.0870 22 1 -0.3633 0.5873 0.8433 23 1 -0.3634 0.4367 -0.9303 24 1 2.0471 -0.9353 0.0004 25 1 3.2477 1.1523 -0.0855 26 1 -0.0666 1.8795 -1.3221 27 1 -1.2897 4.0000 -1.1176 28 1 -1.5830 6.0541 0.2661 29 1 1.7553 10.3058 1.7853 30 1 1.5642 5.3772 1.7643 31 1 2.7878 3.2557 1.5730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568945680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:25 Heat of formation + Delta-G solvation = -17.319455 kcal Electronic energy + Delta-G solvation = -15140.296029 eV Core-core repulsion = 12578.995568 eV Total energy + Delta-G solvation = -2561.300461 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90346 -39.12267 -36.37030 -34.81407 -34.26243 -31.82121 -30.42249 -28.73367 -27.34355 -23.82844 -23.40954 -21.67194 -19.99305 -19.45115 -17.92602 -17.63063 -16.62689 -16.28624 -15.70297 -15.40217 -15.03681 -14.71027 -14.49291 -14.33091 -13.67235 -13.37535 -13.19952 -13.15571 -12.75898 -12.72359 -12.51428 -12.10851 -12.05456 -11.62806 -11.10985 -10.84267 -9.96043 -9.92341 -9.65676 -8.42420 -8.39197 -7.04424 0.30300 0.62384 1.38658 1.39542 1.52891 1.54574 2.19951 2.36391 2.95957 3.04565 3.63990 4.03767 4.04878 4.14137 4.33698 4.51296 4.58990 4.74330 4.84704 4.95204 5.07939 5.18093 5.19305 5.26294 5.46074 5.58960 5.66328 5.84294 5.88060 5.95614 6.05264 6.18070 6.47226 6.70874 7.38359 8.35946 8.54176 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.071667 B = 0.005206 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.602898 B = 5377.052911 C = 5669.133734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C -0.136 4.136 4 C -0.104 4.104 5 C -0.086 4.086 6 C -0.175 4.175 7 C 0.161 3.839 8 N -0.693 5.693 9 C 0.525 3.475 10 O -0.612 6.612 11 C -0.566 4.566 12 H 0.092 0.908 13 C 0.031 3.969 14 N -0.801 5.801 15 Si 1.004 2.996 16 H -0.253 1.253 17 H -0.272 1.272 18 H -0.252 1.252 19 C -0.169 4.169 20 C -0.096 4.096 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.159 0.841 27 H 0.143 0.857 28 H 0.406 0.594 29 H 0.280 0.720 30 H 0.101 0.899 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 -13.264 -3.241 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.105 4.105 5 C -0.104 4.104 6 C -0.196 4.196 7 C 0.062 3.938 8 N -0.335 5.335 9 C 0.335 3.665 10 O -0.500 6.500 11 C -0.601 4.601 12 H 0.110 0.890 13 C -0.187 4.187 14 N -0.429 5.429 15 Si 0.822 3.178 16 H -0.177 1.177 17 H -0.197 1.197 18 H -0.176 1.176 19 C -0.191 4.191 20 C -0.115 4.115 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.154 0.846 25 H 0.141 0.859 26 H 0.176 0.824 27 H 0.161 0.839 28 H 0.241 0.759 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.698 -13.084 -3.070 13.939 hybrid contribution -0.322 1.100 0.282 1.180 sum -4.020 -11.984 -2.788 12.944 Atomic orbital electron populations 1.21179 0.93001 1.02712 1.02209 1.23550 0.96740 0.97386 0.98259 1.21656 0.99288 0.90893 1.03517 1.19161 0.97045 0.95166 0.99166 1.21511 0.93956 0.96481 0.98423 1.21035 1.03758 0.94705 1.00129 1.18396 0.93896 0.86969 0.94521 1.43672 1.11977 1.06496 1.71357 1.17423 0.87311 0.83709 0.78059 1.90593 1.16045 1.85515 1.57813 1.20565 0.96274 0.94339 1.48893 0.89008 1.27065 0.95569 1.04555 0.91523 1.70167 1.10536 1.30347 1.31882 0.84978 0.78201 0.74436 0.80170 1.17681 1.19677 1.17596 1.21261 0.98120 0.97874 1.01823 1.21195 0.99345 0.92085 0.98863 0.90693 0.92859 0.90242 0.84634 0.85921 0.82373 0.83888 0.75863 0.91022 0.88095 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.45 71.24 0.60 -1.83 16 2 C -0.14 -2.75 10.32 24.51 0.25 -2.50 16 3 C -0.14 -3.35 9.75 23.56 0.23 -3.12 16 4 C -0.10 -3.32 5.25 -20.06 -0.11 -3.42 16 5 C -0.09 -2.55 8.06 22.51 0.18 -2.37 16 6 C -0.18 -6.00 9.93 22.39 0.22 -5.78 16 7 C 0.16 7.14 6.39 38.50 0.25 7.38 16 8 N -0.69 -32.81 5.32 -311.44 -1.66 -34.47 16 9 C 0.53 30.77 7.35 85.08 0.63 31.39 16 10 O -0.61 -40.90 12.13 -4.64 -0.06 -40.95 16 11 C -0.57 -31.57 9.31 23.57 0.22 -31.35 16 12 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 13 C 0.03 1.70 5.50 85.33 0.47 2.17 16 14 N -0.80 -48.06 11.73 21.85 0.26 -47.81 16 15 Si 1.00 39.57 29.56 68.60 2.03 41.60 16 16 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 17 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 19 C -0.17 -8.04 8.67 22.39 0.19 -7.84 16 20 C -0.10 -3.71 9.78 22.51 0.22 -3.49 16 21 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.05 1.16 7.61 -2.39 -0.02 1.14 16 23 H 0.08 1.33 5.50 -2.38 -0.01 1.31 16 24 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 25 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 26 H 0.16 3.53 5.33 -2.91 -0.02 3.52 16 27 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 28 H 0.41 16.05 8.74 -92.71 -0.81 15.24 16 29 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 30 H 0.10 5.71 5.93 -2.91 -0.02 5.69 16 31 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -73.87 268.41 4.27 -69.60 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.34 Total: 32.79 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 3.36 Total: -20.76 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.40 Total: -82.28 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.06 Total: -40.95 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -73.87 4.27 -69.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568945680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.278 kcal (2) G-P(sol) polarization free energy of solvation -73.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds