Wall clock time and date at job start Thu Apr 9 2020 12:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46940 * 2 1 4 4 C 1.36933 * 120.00066 * 264.45698 * 3 2 1 5 5 H 1.08002 * 119.99963 * 190.92959 * 4 3 2 6 6 C 1.38807 * 120.00158 * 10.92232 * 4 3 2 7 7 N 1.31617 * 120.00076 * 19.57484 * 6 4 3 8 8 Si 1.86804 * 120.00006 * 199.57677 * 6 4 3 9 9 H 1.48501 * 109.47205 * 84.97872 * 8 6 4 10 10 H 1.48509 * 109.47076 * 204.97617 * 8 6 4 11 11 H 1.48499 * 109.46918 * 324.97370 * 8 6 4 12 12 C 1.46504 * 119.99601 * 84.45882 * 3 2 1 13 13 C 1.50709 * 109.46682 * 269.99632 * 12 3 2 14 14 C 1.38349 * 119.45221 * 95.00136 * 13 12 3 15 15 C 1.38345 * 119.31287 * 180.02562 * 14 13 12 16 16 C 1.40070 * 118.27979 * 0.25845 * 15 14 13 17 17 C 1.43203 * 120.56266 * 179.74198 * 16 15 14 18 18 N 7.92782 * 49.36621 * 24.57182 * 2 1 3 19 19 C 1.39579 * 118.87168 * 359.50260 * 16 15 14 20 20 N 1.31701 * 120.55607 * 0.50565 * 19 16 15 21 21 H 1.08993 * 109.47116 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46514 * 299.99678 * 1 2 3 23 23 H 1.08995 * 109.47334 * 59.99506 * 1 2 3 24 24 H 1.09002 * 109.46514 * 240.00321 * 2 1 3 25 25 H 1.08995 * 109.47334 * 120.00494 * 2 1 3 26 26 H 0.97002 * 119.99980 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46829 * 150.00070 * 12 3 2 28 28 H 1.08993 * 109.47535 * 29.99588 * 12 3 2 29 29 H 1.08000 * 120.34236 * 0.04855 * 14 13 12 30 30 H 1.08001 * 120.85897 * 179.97438 * 15 14 13 31 31 H 1.08000 * 119.72869 * 180.22784 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3545 1.9886 -1.1803 5 1 2.8768 2.9339 -1.1716 6 6 2.0243 1.3893 -2.3880 7 7 1.0814 0.4720 -2.4313 8 14 2.9181 1.8846 -3.9518 9 1 4.1760 1.1045 -4.0712 10 1 2.0514 1.6089 -5.1258 11 1 3.2372 3.3340 -3.9015 12 6 2.1470 2.1127 1.2629 13 6 0.8576 2.8349 1.5586 14 6 -0.0839 2.2381 2.3780 15 6 -1.2666 2.9034 2.6470 16 6 -1.4657 4.1634 2.0686 17 6 -2.6743 4.8926 2.3097 18 7 -3.6327 5.4715 2.5018 19 6 -0.4639 4.6984 1.2571 20 7 0.6454 4.0253 1.0312 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.8503 0.0535 -3.2754 27 1 2.9585 2.8360 1.1828 28 1 2.3635 1.4113 2.0686 29 1 0.1027 1.2631 2.8034 30 1 -2.0190 2.4606 3.2829 31 1 -0.6013 5.6705 0.8071 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580342228.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:33 Heat of formation + Delta-G solvation = 94.447168 kcal Electronic energy + Delta-G solvation = -15625.970065 eV Core-core repulsion = 13101.808919 eV Total energy + Delta-G solvation = -2524.161145 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.90065 -36.64459 -35.94346 -32.50092 -32.06403 -30.64024 -29.43853 -26.44956 -23.80382 -23.36702 -22.09493 -20.37733 -18.75837 -16.92494 -16.19239 -15.84699 -14.95052 -14.18256 -14.12018 -13.67007 -13.46417 -13.09852 -12.98564 -12.74783 -12.54074 -12.17471 -11.83028 -11.46757 -11.38172 -10.89343 -10.75779 -10.50441 -10.04000 -9.89953 -9.60725 -9.47797 -9.06429 -8.61292 -8.38518 -7.04156 -5.87209 -3.17826 0.92418 1.61304 2.78101 3.19484 3.35595 3.42016 3.43106 4.05916 4.20390 4.45068 4.78054 4.99745 5.10432 5.32303 5.42954 5.48784 5.82980 5.92837 6.09150 6.31890 6.38811 6.47608 6.56584 6.81889 6.95832 6.95967 7.05722 7.60112 7.60634 7.68267 8.04552 8.23085 8.46681 9.10852 9.68456 10.11487 11.13291 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.007528 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.674480 B = 3718.610325 C = 4002.744413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 N -0.573 5.573 4 C -0.232 4.232 5 H 0.082 0.918 6 C -0.007 4.007 7 N -0.895 5.895 8 Si 0.910 3.090 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.181 3.819 13 C 0.155 3.845 14 C -0.171 4.171 15 C -0.032 4.032 16 C -0.125 4.125 17 C 0.273 3.727 18 N -0.441 5.441 19 C 0.158 3.842 20 N -0.467 5.467 21 H 0.020 0.980 22 H 0.018 0.982 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.007 0.993 26 H 0.254 0.746 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 1.143 8.348 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 N -0.290 5.290 4 C -0.361 4.361 5 H 0.100 0.900 6 C -0.205 4.205 7 N -0.539 5.539 8 Si 0.740 3.260 9 H -0.214 1.214 10 H -0.219 1.219 11 H -0.204 1.204 12 C 0.053 3.947 13 C 0.013 3.987 14 C -0.192 4.192 15 C -0.060 4.060 16 C -0.132 4.132 17 C -0.042 4.042 18 N -0.118 5.118 19 C -0.005 4.005 20 N -0.176 5.176 21 H 0.039 0.961 22 H 0.037 0.963 23 H 0.108 0.892 24 H 0.112 0.888 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.905 2.221 7.894 8.251 hybrid contribution -0.429 -0.384 -0.512 0.770 sum -1.334 1.837 7.383 7.724 Atomic orbital electron populations 1.22469 0.99077 0.98469 1.01544 1.21015 0.92687 0.83859 0.98750 1.44776 1.73208 1.09319 1.01697 1.19514 1.28069 1.05517 0.83008 0.90006 1.24908 0.97897 0.99710 0.97946 1.70136 1.28749 1.29934 1.25105 0.86156 0.79159 0.78263 0.82399 1.21368 1.21865 1.20431 1.20156 0.90943 0.93845 0.89736 1.23239 1.00309 0.88626 0.86502 1.21835 0.94654 1.01367 1.01341 1.21420 0.96715 0.91990 0.95837 1.16871 0.91680 0.96550 1.08141 1.25601 0.92650 0.93032 0.92948 1.81200 1.11253 1.09494 1.09829 1.22889 0.87425 0.98748 0.91442 1.67721 1.20847 1.08487 1.20505 0.96135 0.96257 0.89239 0.88788 0.97459 0.93568 0.91287 0.91960 0.84599 0.84995 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.55 37.16 0.35 -3.02 16 2 C 0.16 3.55 5.64 -4.04 -0.02 3.53 16 3 N -0.57 -12.91 2.52 -174.60 -0.44 -13.35 16 4 C -0.23 -5.86 9.73 -15.06 -0.15 -6.01 16 5 H 0.08 2.08 7.88 -52.49 -0.41 1.66 16 6 C -0.01 -0.18 5.01 -17.43 -0.09 -0.27 16 7 N -0.89 -23.75 8.27 55.49 0.46 -23.29 16 8 Si 0.91 20.87 29.60 -169.99 -5.03 15.84 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.18 3.34 6.01 -5.19 -0.03 3.31 16 13 C 0.15 2.74 6.04 -82.51 -0.50 2.24 16 14 C -0.17 -2.55 7.46 -39.50 -0.29 -2.84 16 15 C -0.03 -0.43 9.91 -38.86 -0.39 -0.82 16 16 C -0.12 -1.82 5.74 -106.78 -0.61 -2.43 16 17 C 0.27 4.05 15.37 -22.47 -0.35 3.70 16 18 N -0.44 -7.22 18.54 41.84 0.78 -6.45 16 19 C 0.16 2.47 10.92 -17.11 -0.19 2.28 16 20 N -0.47 -8.61 10.25 -9.12 -0.09 -8.70 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.37 5.07 -51.93 -0.26 0.10 16 23 H 0.09 2.28 6.22 -51.93 -0.32 1.95 16 24 H 0.09 2.34 5.88 -51.93 -0.31 2.04 16 25 H 0.01 0.14 7.97 -51.93 -0.41 -0.27 16 26 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 27 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 28 H 0.06 0.97 7.84 -51.93 -0.41 0.57 16 29 H 0.14 1.77 7.76 -52.49 -0.41 1.37 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -27.72 271.11 -5.86 -33.57 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.35 Total: -1.39 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.26 Total: -0.32 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.70 Total: -51.79 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.72 -5.86 -33.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580342228.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.020 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds