Wall clock time and date at job start Thu Apr 9 2020 12:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46940 * 2 1 4 4 C 1.36933 * 120.00066 * 264.45698 * 3 2 1 5 5 H 1.08002 * 119.99963 * 190.92959 * 4 3 2 6 6 C 1.38807 * 120.00158 * 10.92232 * 4 3 2 7 7 N 1.31617 * 120.00076 * 19.57484 * 6 4 3 8 8 Si 1.86804 * 120.00006 * 199.57677 * 6 4 3 9 9 H 1.48501 * 109.47205 * 84.97872 * 8 6 4 10 10 H 1.48509 * 109.47076 * 204.97617 * 8 6 4 11 11 H 1.48499 * 109.46918 * 324.97370 * 8 6 4 12 12 C 1.46504 * 119.99601 * 84.45882 * 3 2 1 13 13 C 1.50709 * 109.46682 * 269.99632 * 12 3 2 14 14 C 1.38349 * 119.45221 * 95.00136 * 13 12 3 15 15 C 1.38345 * 119.31287 * 180.02562 * 14 13 12 16 16 C 1.40070 * 118.27979 * 0.25845 * 15 14 13 17 17 C 1.43203 * 120.56266 * 179.74198 * 16 15 14 18 18 N 7.92782 * 49.36621 * 24.57182 * 2 1 3 19 19 C 1.39579 * 118.87168 * 359.50260 * 16 15 14 20 20 N 1.31701 * 120.55607 * 0.50565 * 19 16 15 21 21 H 1.08993 * 109.47116 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46514 * 299.99678 * 1 2 3 23 23 H 1.08995 * 109.47334 * 59.99506 * 1 2 3 24 24 H 1.09002 * 109.46514 * 240.00321 * 2 1 3 25 25 H 1.08995 * 109.47334 * 120.00494 * 2 1 3 26 26 H 0.97002 * 119.99980 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46829 * 150.00070 * 12 3 2 28 28 H 1.08993 * 109.47535 * 29.99588 * 12 3 2 29 29 H 1.08000 * 120.34236 * 0.04855 * 14 13 12 30 30 H 1.08001 * 120.85897 * 179.97438 * 15 14 13 31 31 H 1.08000 * 119.72869 * 180.22784 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3545 1.9886 -1.1803 5 1 2.8768 2.9339 -1.1716 6 6 2.0243 1.3893 -2.3880 7 7 1.0814 0.4720 -2.4313 8 14 2.9181 1.8846 -3.9518 9 1 4.1760 1.1045 -4.0712 10 1 2.0514 1.6089 -5.1258 11 1 3.2372 3.3340 -3.9015 12 6 2.1470 2.1127 1.2629 13 6 0.8576 2.8349 1.5586 14 6 -0.0839 2.2381 2.3780 15 6 -1.2666 2.9034 2.6470 16 6 -1.4657 4.1634 2.0686 17 6 -2.6743 4.8926 2.3097 18 7 -3.6327 5.4715 2.5018 19 6 -0.4639 4.6984 1.2571 20 7 0.6454 4.0253 1.0312 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.8503 0.0535 -3.2754 27 1 2.9585 2.8360 1.1828 28 1 2.3635 1.4113 2.0686 29 1 0.1027 1.2631 2.8034 30 1 -2.0190 2.4606 3.2829 31 1 -0.6013 5.6705 0.8071 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580342228.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:32 Heat of formation + Delta-G solvation = 78.904350 kcal Electronic energy + Delta-G solvation = -15626.644052 eV Core-core repulsion = 13101.808919 eV Total energy + Delta-G solvation = -2524.835133 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19253 -38.07294 -37.42871 -33.96252 -33.44092 -32.21183 -31.05668 -27.99365 -25.45422 -24.64575 -23.53287 -22.02412 -19.99582 -18.65313 -17.52500 -17.27822 -16.56997 -15.65777 -15.39704 -15.23658 -15.04768 -14.46960 -14.22860 -14.05675 -13.89948 -13.66346 -13.44261 -13.10776 -12.84679 -12.68806 -12.37023 -12.24643 -11.81898 -11.60905 -11.31174 -10.75204 -10.45626 -10.23987 -9.78209 -8.78564 -7.73297 -5.08649 -0.29674 0.41851 1.51563 1.53936 1.55774 1.59852 1.96477 2.58038 2.80089 2.98344 3.35549 3.58805 3.84812 3.87987 3.96368 4.25171 4.54717 4.72581 4.82599 4.87290 5.04633 5.10009 5.13435 5.25010 5.30029 5.37746 5.70720 5.72404 5.90339 6.28161 6.37971 6.43391 7.17126 7.28899 7.96163 8.32540 9.25320 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.007528 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.674480 B = 3718.610325 C = 4002.744413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.165 3.835 3 N -0.592 5.592 4 C -0.235 4.235 5 H 0.070 0.930 6 C -0.054 4.054 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.287 1.287 10 H -0.303 1.303 11 H -0.279 1.279 12 C 0.180 3.820 13 C 0.143 3.857 14 C -0.166 4.166 15 C -0.019 4.019 16 C -0.110 4.110 17 C 0.291 3.709 18 N -0.461 5.461 19 C 0.148 3.852 20 N -0.501 5.501 21 H 0.029 0.971 22 H 0.040 0.960 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.243 0.757 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 1.275 10.680 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.041 3.959 3 N -0.312 5.312 4 C -0.366 4.366 5 H 0.088 0.912 6 C -0.248 4.248 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.214 1.214 10 H -0.230 1.230 11 H -0.204 1.204 12 C 0.053 3.947 13 C 0.002 3.998 14 C -0.186 4.186 15 C -0.047 4.047 16 C -0.117 4.117 17 C -0.023 4.023 18 N -0.137 5.137 19 C -0.014 4.014 20 N -0.210 5.210 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.181 0.819 30 H 0.187 0.813 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.797 2.407 10.279 10.709 hybrid contribution -0.231 -0.249 -0.950 1.009 sum -2.028 2.158 9.329 9.788 Atomic orbital electron populations 1.22265 0.98777 0.98674 1.00404 1.20840 0.92896 0.83840 0.98344 1.44571 1.74710 1.10073 1.01872 1.19500 1.27994 1.04682 0.84375 0.91189 1.25371 0.98989 1.00685 0.99775 1.70304 1.30166 1.31645 1.24437 0.85442 0.78103 0.77725 0.80121 1.21397 1.22970 1.20446 1.20219 0.91197 0.94321 0.88966 1.23137 0.99715 0.89154 0.87773 1.22088 0.94055 1.02148 1.00342 1.21852 0.96934 0.90977 0.94932 1.16942 0.90900 0.96825 1.07041 1.25449 0.92214 0.92429 0.92252 1.81244 1.11957 1.10093 1.10421 1.23187 0.87172 0.99335 0.91673 1.67666 1.22417 1.09503 1.21404 0.95178 0.94135 0.93377 0.92366 0.94531 0.94766 0.92063 0.88720 0.81920 0.81265 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.93 9.55 71.98 0.69 -5.24 16 2 C 0.17 7.15 5.64 86.38 0.49 7.64 16 3 N -0.59 -26.39 2.52 -706.31 -1.78 -28.18 16 4 C -0.24 -12.09 9.73 84.03 0.82 -11.27 16 5 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 6 C -0.05 -2.86 5.01 84.86 0.43 -2.43 16 7 N -0.92 -50.37 8.27 21.65 0.18 -50.19 16 8 Si 0.96 44.26 29.60 68.60 2.03 46.29 16 9 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.18 6.31 6.01 85.64 0.51 6.82 16 13 C 0.14 4.70 6.04 42.57 0.26 4.95 16 14 C -0.17 -4.24 7.46 22.32 0.17 -4.08 16 15 C -0.02 -0.44 9.91 22.74 0.23 -0.21 16 16 C -0.11 -2.82 5.74 -21.26 -0.12 -2.95 16 17 C 0.29 7.70 15.37 88.33 1.36 9.06 16 18 N -0.46 -13.81 18.54 19.00 0.35 -13.45 16 19 C 0.15 4.30 10.92 85.04 0.93 5.23 16 20 N -0.50 -17.70 10.25 -182.77 -1.87 -19.58 16 21 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.04 1.45 5.07 -2.39 -0.01 1.44 16 23 H 0.05 2.44 6.22 -2.39 -0.01 2.43 16 24 H 0.06 2.95 5.88 -2.39 -0.01 2.93 16 25 H 0.04 1.34 7.97 -2.39 -0.02 1.32 16 26 H 0.24 13.27 8.31 -92.71 -0.77 12.50 16 27 H 0.06 2.20 8.03 -2.39 -0.02 2.19 16 28 H 0.09 2.64 7.84 -2.39 -0.02 2.62 16 29 H 0.16 3.34 7.76 -2.91 -0.02 3.31 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -61.11 271.11 5.79 -55.32 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.14 Total: 2.27 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.75 Total: 7.52 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -3.12 Total: -111.39 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.11 5.79 -55.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580342228.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.224 kcal (2) G-P(sol) polarization free energy of solvation -61.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds