Wall clock time and date at job start Thu Apr 9 2020 12:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38138 * 119.89401 * 2 1 4 4 C 1.38211 * 119.93737 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.93203 * 0.02562 * 4 3 2 6 6 C 1.38451 * 120.21754 * 0.02562 * 5 4 3 7 7 C 1.38256 * 119.85006 * 0.02562 * 6 5 4 8 8 C 1.51364 * 109.75352 * 179.97438 * 7 6 5 9 9 C 1.54355 * 105.16972 * 342.80840 * 8 7 6 10 10 C 1.51369 * 130.39439 * 179.97438 * 6 5 4 11 11 H 1.09000 * 110.38435 * 78.26122 * 10 6 5 12 12 N 1.46895 * 110.30443 * 316.14499 * 10 6 5 13 13 C 1.46904 * 111.00014 * 89.25459 * 12 10 6 14 14 C 1.50701 * 109.47195 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27796 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 H 1.08995 * 109.47086 * 269.94502 * 1 2 3 23 23 H 1.09001 * 109.47354 * 29.94976 * 1 2 3 24 24 H 1.09003 * 109.47342 * 149.94669 * 1 2 3 25 25 H 1.07998 * 120.03222 * 0.02562 * 3 2 1 26 26 H 1.08003 * 120.03225 * 179.97438 * 4 3 2 27 27 H 1.08008 * 119.89098 * 180.02562 * 5 4 3 28 28 H 1.09003 * 110.30688 * 223.89244 * 8 7 6 29 29 H 1.09000 * 110.38747 * 101.77602 * 8 7 6 30 30 H 1.08993 * 110.82663 * 268.12705 * 9 8 7 31 31 H 1.09003 * 110.81823 * 144.58025 * 9 8 7 32 32 H 1.00903 * 111.00189 * 325.30195 * 12 10 6 33 33 H 1.09000 * 109.47038 * 59.99386 * 13 12 10 34 34 H 1.09007 * 109.46566 * 299.99918 * 13 12 10 35 35 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1976 0.0000 4 6 3.5776 1.1986 -0.0005 5 6 4.2678 0.0020 -0.0016 6 6 3.5796 -1.1994 -0.0027 7 6 2.1970 -1.2004 -0.0032 8 6 1.6865 -2.6254 -0.0050 9 6 2.8903 -3.4851 -0.4458 10 6 4.0923 -2.6236 -0.0045 11 1 4.4169 -2.9115 0.9955 12 7 5.1993 -2.7656 -0.9596 13 6 6.4889 -2.4786 -0.3172 14 6 7.5979 -2.6335 -1.3257 15 1 7.3678 -2.9174 -2.3421 16 6 8.9068 -2.4191 -0.9493 17 7 9.1871 -2.0739 0.2884 18 14 10.2822 -2.6188 -2.1974 19 1 10.0723 -1.6711 -3.3213 20 1 11.5863 -2.3333 -1.5469 21 1 10.2817 -4.0102 -2.7164 22 1 -0.3633 -0.0010 1.0276 23 1 -0.3634 0.8904 -0.5130 24 1 -0.3634 -0.8895 -0.5147 25 1 1.6543 2.1322 0.0004 26 1 4.1174 2.1341 -0.0010 27 1 5.3479 0.0036 -0.0016 28 1 0.8657 -2.7322 -0.7142 29 1 1.3618 -2.9136 0.9948 30 1 2.8909 -3.6258 -1.5266 31 1 2.8908 -4.4449 0.0709 32 1 5.0583 -2.1768 -1.7667 33 1 6.6470 -3.1740 0.5071 34 1 6.4853 -1.4575 0.0644 35 1 10.1080 -1.9234 0.5532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580434792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:34 Heat of formation + Delta-G solvation = -7.351458 kcal Electronic energy + Delta-G solvation = -15714.640902 eV Core-core repulsion = 13289.605780 eV Total energy + Delta-G solvation = -2425.035122 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27935 -37.63105 -35.68127 -34.30275 -33.18443 -29.93464 -29.18930 -27.43487 -26.43185 -23.67375 -22.89901 -21.83174 -20.88069 -18.51330 -17.48216 -16.76282 -16.50747 -16.04734 -15.91266 -15.26823 -14.69183 -14.56055 -14.28990 -13.90866 -13.52848 -13.33765 -13.06675 -13.00808 -12.93053 -12.74642 -12.48791 -12.33000 -12.12651 -11.90586 -11.72552 -11.66814 -11.22510 -10.68576 -9.66927 -9.43660 -9.01141 -8.23910 -6.35555 0.42041 0.44397 1.38928 1.42818 1.50858 2.38363 2.78551 3.08861 3.45532 3.57136 3.84845 4.05288 4.10428 4.21564 4.31268 4.38380 4.49258 4.66495 4.72530 4.82050 4.89849 4.94394 5.04708 5.08058 5.15050 5.21294 5.25683 5.33417 5.38878 5.58383 5.61581 5.65209 5.76819 6.00431 6.14171 6.42212 6.67460 6.85580 7.35138 8.87309 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.038358 B = 0.006064 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.797301 B = 4616.113054 C = 5074.169787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.083 4.083 3 C -0.123 4.123 4 C -0.126 4.126 5 C -0.135 4.135 6 C -0.138 4.138 7 C -0.101 4.101 8 C -0.070 4.070 9 C -0.099 4.099 10 C 0.114 3.886 11 H 0.062 0.938 12 N -0.674 5.674 13 C 0.208 3.792 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.267 1.267 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.134 0.866 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.332 0.668 33 H -0.006 1.006 34 H -0.031 1.031 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.168 3.982 -0.724 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.101 4.101 8 C -0.107 4.107 9 C -0.137 4.137 10 C 0.003 3.997 11 H 0.080 0.920 12 N -0.302 5.302 13 C 0.081 3.919 14 C -0.576 4.576 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.192 1.192 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.170 0.830 26 H 0.152 0.848 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.012 0.988 34 H -0.013 1.013 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.954 3.310 -0.520 18.264 hybrid contribution 1.602 1.023 -0.039 1.901 sum -16.352 4.333 -0.559 16.926 Atomic orbital electron populations 1.20803 0.88594 1.03816 1.03169 1.19860 0.97748 0.91251 0.99413 1.21253 0.93389 0.98563 1.00833 1.21223 0.95380 0.97154 1.00665 1.20849 0.99189 0.93171 1.02180 1.21524 0.96039 0.95748 1.00641 1.20747 0.93001 0.96311 1.00081 1.21055 0.98010 0.88499 1.03113 1.22298 0.91326 0.98007 1.02076 1.21345 0.92459 0.90040 0.95835 0.92010 1.60746 1.01630 1.59125 1.08740 1.19271 0.86503 0.92332 0.93835 1.21515 0.92048 1.46734 0.97280 0.91945 1.25948 1.01599 0.94525 0.97501 1.70089 1.20194 1.48153 1.18966 0.85382 0.77260 0.79092 0.78536 1.19194 1.20650 1.19208 0.90199 0.90237 0.90619 0.83032 0.84836 0.89293 0.88378 0.88892 0.90554 0.89493 0.85080 0.98774 1.01332 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.87 71.24 0.70 -1.00 16 2 C -0.08 -2.04 5.88 -19.84 -0.12 -2.15 16 3 C -0.12 -3.08 9.69 22.24 0.22 -2.86 16 4 C -0.13 -3.89 10.05 22.24 0.22 -3.67 16 5 C -0.14 -5.22 9.75 22.30 0.22 -5.00 16 6 C -0.14 -5.04 5.49 -19.60 -0.11 -5.14 16 7 C -0.10 -2.91 6.00 -19.60 -0.12 -3.03 16 8 C -0.07 -1.61 6.27 30.52 0.19 -1.42 16 9 C -0.10 -2.84 6.77 31.51 0.21 -2.63 16 10 C 0.11 4.37 3.19 44.84 0.14 4.51 16 11 H 0.06 2.59 7.82 -2.39 -0.02 2.58 16 12 N -0.67 -30.96 6.26 -495.99 -3.10 -34.06 16 13 C 0.21 11.68 5.22 85.56 0.45 12.13 16 14 C -0.54 -31.77 9.32 25.60 0.24 -31.54 16 15 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 16 C 0.00 0.15 5.46 84.65 0.46 0.61 16 17 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 18 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.07 1.06 7.29 -2.39 -0.02 1.04 16 25 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 26 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.09 4.03 6.12 -2.91 -0.02 4.01 16 28 H 0.10 1.76 7.62 -2.39 -0.02 1.75 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.33 15.06 8.43 -89.69 -0.76 14.31 16 33 H -0.01 -0.36 8.07 -2.39 -0.02 -0.38 16 34 H -0.03 -1.85 5.98 -2.38 -0.01 -1.86 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -68.03 287.53 2.24 -65.78 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.32 Total: 19.70 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 2.71 Total: -41.20 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -2.82 Total: -91.65 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.03 2.24 -65.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580434792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.432 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds