Wall clock time and date at job start Thu Apr 9 2020 12:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48508 * 109.46917 * 270.00033 * 3 2 1 5 5 H 1.48500 * 109.47029 * 29.99747 * 3 2 1 6 6 H 1.48500 * 109.47340 * 150.00263 * 3 2 1 7 7 C 1.37880 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99524 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00214 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00035 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.84591 * 336.20169 * 11 10 9 13 13 C 1.53954 * 113.61118 * 107.46414 * 11 10 9 14 14 C 1.53781 * 87.01606 * 89.20267 * 13 11 10 15 15 H 1.09002 * 113.61408 * 270.76947 * 14 13 11 16 16 C 1.50706 * 113.61527 * 139.95344 * 14 13 11 17 17 C 1.38240 * 119.99511 * 320.58826 * 16 14 13 18 18 C 1.38239 * 119.99439 * 179.78744 * 17 16 14 19 19 C 1.38233 * 120.00187 * 0.44683 * 18 17 16 20 20 C 1.38235 * 119.99957 * 359.80568 * 19 18 17 21 21 C 1.38235 * 120.00299 * 359.97438 * 20 19 18 22 22 C 1.53778 * 113.61521 * 205.00116 * 11 10 9 23 23 H 0.97003 * 119.99892 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47016 * 60.00047 * 9 7 2 25 25 H 1.09004 * 109.47430 * 300.00339 * 9 7 2 26 26 H 1.00901 * 110.99979 * 56.05100 * 10 9 7 27 27 H 1.09005 * 113.66772 * 334.67848 * 13 11 10 28 28 H 1.08999 * 113.61605 * 203.72302 * 13 11 10 29 29 H 1.07998 * 120.00199 * 359.97438 * 17 16 14 30 30 H 1.08000 * 119.99490 * 180.27441 * 18 17 16 31 31 H 1.07992 * 120.00171 * 179.83401 * 19 18 17 32 32 H 1.07995 * 119.99980 * 180.02562 * 20 19 18 33 33 H 1.07999 * 120.00568 * 180.02562 * 21 20 19 34 34 H 1.09000 * 113.61172 * 156.25248 * 22 11 10 35 35 H 1.09000 * 113.69145 * 25.36119 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 1 0.4958 -4.8409 0.4057 13 6 1.5830 -5.6514 -1.3454 14 6 2.8784 -6.2948 -0.8230 15 1 3.7748 -5.7174 -1.0492 16 6 3.0154 -7.7524 -1.1807 17 6 1.9096 -8.5810 -1.1395 18 6 2.0344 -9.9170 -1.4719 19 6 3.2666 -10.4264 -1.8366 20 6 4.3733 -9.5989 -1.8728 21 6 4.2478 -8.2619 -1.5448 22 6 2.3344 -6.0572 0.5956 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8404 -3.5487 0.7809 27 1 1.7365 -4.9937 -2.2010 28 1 0.7723 -6.3638 -1.4978 29 1 0.9477 -8.1840 -0.8505 30 1 1.1696 -10.5634 -1.4439 31 1 3.3646 -11.4706 -2.0937 32 1 5.3359 -9.9967 -2.1582 33 1 5.1123 -7.6152 -1.5735 34 1 1.7293 -6.8807 0.9749 35 1 3.0937 -5.7281 1.3050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591764813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:48 Heat of formation + Delta-G solvation = 36.414848 kcal Electronic energy + Delta-G solvation = -15163.088847 eV Core-core repulsion = 12739.951574 eV Total energy + Delta-G solvation = -2423.137272 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90751 -37.88536 -33.96353 -32.06736 -30.92750 -30.33355 -26.42256 -25.32952 -24.29368 -22.58255 -21.67779 -21.00568 -18.43008 -17.07346 -16.31037 -15.50439 -15.07607 -14.67403 -14.51863 -14.08293 -13.87541 -13.38159 -12.93268 -12.71423 -12.31653 -12.08169 -11.63756 -11.46098 -11.35529 -11.09838 -10.82388 -10.75670 -10.44873 -10.12212 -9.98361 -9.68102 -9.11301 -8.91332 -8.56615 -8.47548 -7.28930 -6.02823 -4.04824 1.37958 1.40671 3.32676 3.38307 3.42037 3.78402 4.42885 4.77411 4.85191 4.97188 5.01692 5.11250 5.13396 5.24915 5.33075 5.39473 5.52840 5.54568 5.73996 5.96779 5.98368 6.07489 6.10084 6.22941 6.45512 6.47512 6.51193 6.54025 6.70260 6.86300 7.02882 7.29743 7.43423 7.80083 8.14656 8.40180 8.62622 9.04639 9.60111 11.08342 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.065000 B = 0.004220 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.664712 B = 6633.476525 C = 6866.737853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.671 5.671 11 C 0.065 3.935 12 H 0.050 0.950 13 C -0.124 4.124 14 C -0.066 4.066 15 H 0.101 0.899 16 C -0.060 4.060 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.134 4.134 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.136 4.136 23 H 0.261 0.739 24 H 0.028 0.972 25 H -0.013 1.013 26 H 0.331 0.669 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.215 -18.323 -1.684 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.303 5.303 11 C -0.046 4.046 12 H 0.068 0.932 13 C -0.162 4.162 14 C -0.085 4.085 15 H 0.120 0.880 16 C -0.060 4.060 17 C -0.136 4.136 18 C -0.139 4.139 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.174 4.174 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.005 0.995 26 H 0.149 0.851 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.138 -18.172 -2.360 19.032 hybrid contribution 0.028 0.851 0.840 1.196 sum 5.166 -17.322 -1.520 18.139 Atomic orbital electron populations 1.69965 1.06092 1.26777 1.50905 1.24992 0.94876 0.99375 0.95347 0.86480 0.79673 0.82997 0.78131 1.20613 1.21314 1.19847 1.21190 0.93510 0.90274 1.50351 0.91974 1.19603 0.90575 0.87234 0.95788 1.60548 1.20748 1.00394 1.48562 1.22565 0.96301 0.90096 0.95661 0.93250 1.23134 0.95667 0.98425 0.98994 1.21486 0.99732 0.90353 0.96897 0.88042 1.20020 0.93060 0.95871 0.97018 1.21073 0.98741 0.93435 1.00365 1.21119 0.97424 0.95502 0.99835 1.21075 0.93147 0.99525 1.01453 1.21118 0.98503 0.93974 1.00338 1.21124 0.97319 0.95370 0.99918 1.23306 0.99618 0.98800 0.95651 0.92917 0.95367 0.99550 0.85145 0.90591 0.90734 0.85980 0.86407 0.86572 0.86433 0.86129 0.90347 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 5.14 5.28 -4.98 -0.03 5.12 16 10 N -0.67 -14.34 6.44 -107.03 -0.69 -15.03 16 11 C 0.06 1.15 4.23 -66.81 -0.28 0.87 16 12 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 13 C -0.12 -1.96 7.27 -25.83 -0.19 -2.15 16 14 C -0.07 -0.95 3.89 -90.96 -0.35 -1.30 16 15 H 0.10 1.52 8.09 -51.93 -0.42 1.10 16 16 C -0.06 -0.78 5.29 -104.62 -0.55 -1.33 16 17 C -0.12 -1.43 8.53 -39.58 -0.34 -1.77 16 18 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 19 C -0.13 -1.38 10.05 -39.58 -0.40 -1.77 16 20 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 21 C -0.12 -1.43 9.71 -39.58 -0.38 -1.81 16 22 C -0.14 -1.95 7.22 -25.92 -0.19 -2.14 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 25 H -0.01 -0.37 8.13 -51.93 -0.42 -0.79 16 26 H 0.33 6.74 8.38 -39.29 -0.33 6.42 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.05 6.41 -51.93 -0.33 0.72 16 29 H 0.12 1.39 6.73 -52.49 -0.35 1.03 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.30 8.05 -52.49 -0.42 0.88 16 34 H 0.08 1.02 7.62 -51.93 -0.40 0.63 16 35 H 0.07 0.96 7.91 -51.93 -0.41 0.55 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -30.13 292.68 -9.64 -39.77 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.15 Total: 3.52 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -3.92 Total: -23.17 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.05 Total: -41.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.13 -9.64 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.187 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds