Wall clock time and date at job start Thu Apr 9 2020 12:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48508 * 109.46917 * 270.00033 * 3 2 1 5 5 H 1.48500 * 109.47029 * 29.99747 * 3 2 1 6 6 H 1.48500 * 109.47340 * 150.00263 * 3 2 1 7 7 C 1.37880 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99524 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00214 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00035 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.84591 * 336.20169 * 11 10 9 13 13 C 1.53954 * 113.61118 * 107.46414 * 11 10 9 14 14 C 1.53781 * 87.01606 * 89.20267 * 13 11 10 15 15 H 1.09002 * 113.61408 * 270.76947 * 14 13 11 16 16 C 1.50706 * 113.61527 * 139.95344 * 14 13 11 17 17 C 1.38240 * 119.99511 * 320.58826 * 16 14 13 18 18 C 1.38239 * 119.99439 * 179.78744 * 17 16 14 19 19 C 1.38233 * 120.00187 * 0.44683 * 18 17 16 20 20 C 1.38235 * 119.99957 * 359.80568 * 19 18 17 21 21 C 1.38235 * 120.00299 * 359.97438 * 20 19 18 22 22 C 1.53778 * 113.61521 * 205.00116 * 11 10 9 23 23 H 0.97003 * 119.99892 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47016 * 60.00047 * 9 7 2 25 25 H 1.09004 * 109.47430 * 300.00339 * 9 7 2 26 26 H 1.00901 * 110.99979 * 56.05100 * 10 9 7 27 27 H 1.09005 * 113.66772 * 334.67848 * 13 11 10 28 28 H 1.08999 * 113.61605 * 203.72302 * 13 11 10 29 29 H 1.07998 * 120.00199 * 359.97438 * 17 16 14 30 30 H 1.08000 * 119.99490 * 180.27441 * 18 17 16 31 31 H 1.07992 * 120.00171 * 179.83401 * 19 18 17 32 32 H 1.07995 * 119.99980 * 180.02562 * 20 19 18 33 33 H 1.07999 * 120.00568 * 180.02562 * 21 20 19 34 34 H 1.09000 * 113.61172 * 156.25248 * 22 11 10 35 35 H 1.09000 * 113.69145 * 25.36119 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 1 0.4958 -4.8409 0.4057 13 6 1.5830 -5.6514 -1.3454 14 6 2.8784 -6.2948 -0.8230 15 1 3.7748 -5.7174 -1.0492 16 6 3.0154 -7.7524 -1.1807 17 6 1.9096 -8.5810 -1.1395 18 6 2.0344 -9.9170 -1.4719 19 6 3.2666 -10.4264 -1.8366 20 6 4.3733 -9.5989 -1.8728 21 6 4.2478 -8.2619 -1.5448 22 6 2.3344 -6.0572 0.5956 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8404 -3.5487 0.7809 27 1 1.7365 -4.9937 -2.2010 28 1 0.7723 -6.3638 -1.4978 29 1 0.9477 -8.1840 -0.8505 30 1 1.1696 -10.5634 -1.4439 31 1 3.3646 -11.4706 -2.0937 32 1 5.3359 -9.9967 -2.1582 33 1 5.1123 -7.6152 -1.5735 34 1 1.7293 -6.8807 0.9749 35 1 3.0937 -5.7281 1.3050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591764813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:47 Heat of formation + Delta-G solvation = 18.958771 kcal Electronic energy + Delta-G solvation = -15163.845799 eV Core-core repulsion = 12739.951574 eV Total energy + Delta-G solvation = -2423.894225 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00028 -39.00381 -35.86617 -33.93283 -31.79661 -31.47840 -28.39128 -26.60226 -25.56754 -23.81775 -23.31423 -22.10943 -19.79026 -18.45639 -17.97426 -16.75920 -16.54118 -16.09875 -15.91148 -15.40068 -15.17786 -14.35474 -14.29080 -14.04710 -13.95235 -13.49194 -13.22333 -12.93228 -12.75501 -12.60544 -12.39338 -12.07929 -12.00384 -11.57873 -11.47969 -11.29383 -10.91631 -10.65967 -9.75217 -9.47979 -9.10296 -8.23450 -6.35009 0.51088 0.56710 1.40984 1.43110 1.54330 2.39533 2.91661 3.09904 3.41114 3.71522 3.84745 3.99981 4.04366 4.16673 4.23044 4.34446 4.43527 4.64638 4.73451 4.74710 4.80221 4.89850 5.08772 5.13842 5.18182 5.19938 5.24363 5.37509 5.41303 5.63038 5.67360 5.68501 5.87221 6.03064 6.19835 6.45110 6.73572 6.89096 7.36198 8.88376 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.065000 B = 0.004220 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.664712 B = 6633.476525 C = 6866.737853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.668 5.668 11 C 0.047 3.953 12 H 0.035 0.965 13 C -0.120 4.120 14 C -0.053 4.053 15 H 0.091 0.909 16 C -0.078 4.078 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.118 4.118 23 H 0.265 0.735 24 H -0.003 1.003 25 H -0.040 1.040 26 H 0.337 0.663 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 -19.644 -1.752 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.299 5.299 11 C -0.063 4.063 12 H 0.053 0.947 13 C -0.159 4.159 14 C -0.072 4.072 15 H 0.109 0.891 16 C -0.078 4.078 17 C -0.148 4.148 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.156 4.156 23 H 0.074 0.926 24 H 0.015 0.985 25 H -0.022 1.022 26 H 0.155 0.845 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.485 -19.520 -2.427 20.712 hybrid contribution -0.420 1.155 0.835 1.486 sum 6.065 -18.365 -1.592 19.406 Atomic orbital electron populations 1.70097 1.07877 1.28038 1.51487 1.25984 0.95804 1.03490 0.94521 0.85300 0.78535 0.77803 0.78455 1.19892 1.20642 1.18591 1.21553 0.93851 0.91399 1.50680 0.91640 1.19223 0.90604 0.88883 0.93005 1.60415 1.19933 1.00679 1.48903 1.22717 0.96003 0.89576 0.98035 0.94664 1.23132 0.97666 0.98222 0.96844 1.21275 0.98166 0.91484 0.96244 0.89071 1.19914 0.94095 0.94906 0.98849 1.21200 0.98568 0.94193 1.00855 1.21427 0.98612 0.95184 0.99117 1.21461 0.92700 1.00836 1.00177 1.21432 0.99854 0.93409 0.99606 1.21302 0.97175 0.96384 1.00184 1.23224 0.99042 0.97319 0.96000 0.92593 0.98482 1.02194 0.84509 0.92961 0.88849 0.85740 0.84256 0.83945 0.84170 0.85622 0.88434 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -31.17 9.32 25.60 0.24 -30.93 16 8 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 11.62 5.28 85.56 0.45 12.07 16 10 N -0.67 -29.38 6.44 -492.54 -3.17 -32.55 16 11 C 0.05 1.72 4.23 45.50 0.19 1.91 16 12 H 0.04 1.38 7.86 -2.39 -0.02 1.36 16 13 C -0.12 -3.87 7.27 31.18 0.23 -3.65 16 14 C -0.05 -1.50 3.89 -11.01 -0.04 -1.54 16 15 H 0.09 2.73 8.09 -2.39 -0.02 2.71 16 16 C -0.08 -1.92 5.29 -19.86 -0.11 -2.02 16 17 C -0.13 -2.92 8.53 22.27 0.19 -2.73 16 18 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 19 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 20 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 21 C -0.13 -2.96 9.71 22.27 0.22 -2.75 16 22 C -0.12 -3.30 7.22 31.12 0.22 -3.07 16 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 24 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H -0.04 -2.34 8.13 -2.39 -0.02 -2.36 16 26 H 0.34 13.95 8.38 -89.69 -0.75 13.20 16 27 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.09 2.61 6.41 -2.39 -0.02 2.60 16 29 H 0.12 2.63 6.73 -2.91 -0.02 2.61 16 30 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.13 2.57 8.05 -2.91 -0.02 2.54 16 34 H 0.10 2.38 7.62 -2.39 -0.02 2.36 16 35 H 0.07 1.99 7.91 -2.39 -0.02 1.97 16 Total: -1.00 -65.43 292.68 2.18 -63.25 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.31 Total: 18.22 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 2.73 Total: -38.58 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -2.89 Total: -89.64 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.43 2.18 -63.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.207 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds