Wall clock time and date at job start Thu Apr 9 2020 12:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 103.00075 * 2 1 4 4 C 1.53001 * 109.47278 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46857 * 180.02562 * 4 3 2 6 6 C 1.48720 * 111.01831 * 54.49058 * 5 4 3 7 7 C 1.54381 * 104.51692 * 158.96284 * 6 5 4 8 8 C 1.54257 * 105.14978 * 336.27274 * 7 6 5 9 9 O 1.42910 * 110.32027 * 241.04997 * 8 7 6 10 10 C 1.50697 * 110.32628 * 118.84329 * 8 7 6 11 11 H 1.07995 * 120.00073 * 241.44522 * 10 8 7 12 12 C 1.37883 * 119.99811 * 61.45328 * 10 8 7 13 13 N 1.31514 * 119.99933 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99722 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46901 * 60.00150 * 14 12 10 16 16 H 1.48501 * 109.47188 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47596 * 299.99981 * 14 12 10 18 18 C 1.48567 * 110.99718 * 170.00040 * 5 4 3 19 19 H 1.08993 * 109.47138 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47297 * 300.00133 * 1 2 3 21 21 H 1.09004 * 109.46843 * 60.00112 * 1 2 3 22 22 H 1.09003 * 109.47014 * 59.99855 * 3 2 1 23 23 H 1.09000 * 109.47082 * 299.99750 * 3 2 1 24 24 H 1.09003 * 109.47184 * 59.99999 * 4 3 2 25 25 H 1.09000 * 109.46892 * 299.99906 * 4 3 2 26 26 H 1.09004 * 110.38960 * 40.24251 * 6 5 4 27 27 H 1.08996 * 110.50963 * 277.74694 * 6 5 4 28 28 H 1.09002 * 110.32526 * 217.32092 * 7 6 5 29 29 H 1.08998 * 110.32190 * 95.21733 * 7 6 5 30 30 H 0.96699 * 114.00154 * 298.54485 * 9 8 7 31 31 H 0.97002 * 119.99478 * 180.02562 * 13 12 10 32 32 H 1.08999 * 110.41133 * 82.17552 * 18 5 4 33 33 H 1.09001 * 110.41003 * 319.73948 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 0.0006 5 7 4.0727 3.3714 0.0013 6 6 3.4066 4.0720 1.1313 7 6 4.2348 5.3596 1.3305 8 6 5.6257 5.0387 0.7458 9 8 6.6268 5.1441 1.7601 10 6 5.9392 5.9672 -0.3991 11 1 6.1039 5.5677 -1.3888 12 6 6.0158 7.3268 -0.1828 13 7 5.8159 7.8132 1.0226 14 14 6.4051 8.4776 -1.6018 15 1 5.3635 8.3394 -2.6512 16 1 6.4291 9.8788 -1.1104 17 1 7.7314 8.1297 -2.1719 18 6 5.5233 3.5828 0.2427 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8031 2.2371 0.8900 23 1 1.8032 2.2371 -0.8900 24 1 4.1617 1.4703 -0.8891 25 1 4.1609 1.4705 0.8909 26 1 3.4377 3.4571 2.0308 27 1 2.3766 4.3186 0.8738 28 1 4.3156 5.5975 2.3911 29 1 3.7795 6.1898 0.7906 30 1 6.7050 6.0276 2.1453 31 1 5.8695 8.7698 1.1745 32 1 6.0847 3.4602 -0.6835 33 1 5.8869 2.8914 1.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147139.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:51 Heat of formation + Delta-G solvation = -49.565318 kcal Electronic energy + Delta-G solvation = -14661.484141 eV Core-core repulsion = 12234.229346 eV Total energy + Delta-G solvation = -2427.254795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.47525 -35.19892 -32.09238 -31.66882 -29.16211 -28.44149 -27.47519 -24.44602 -22.69330 -20.05354 -19.39897 -17.01095 -16.23514 -15.47408 -15.29210 -14.76887 -14.19820 -13.99788 -13.76573 -13.47403 -13.05478 -12.85008 -12.46847 -12.14222 -11.57916 -11.40664 -11.08783 -10.98485 -10.81298 -10.52658 -10.47580 -10.31445 -10.04302 -9.90276 -9.04126 -8.54777 -8.12364 -7.87482 -7.73844 -6.14797 -4.20385 1.59939 2.54026 3.29398 3.33262 3.37272 4.36903 4.60265 4.93576 4.98662 5.00504 5.09368 5.16001 5.52793 5.61244 5.67384 5.82604 5.97385 6.01776 6.14824 6.21121 6.35898 6.49911 6.86806 7.04045 7.20245 7.53025 7.64703 7.67331 7.86933 8.23357 8.81914 9.43957 9.52860 10.92735 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.045831 B = 0.005769 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.797101 B = 4852.384153 C = 5021.929142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.272 6.272 3 C -0.078 4.078 4 C 0.061 3.939 5 N -0.497 5.497 6 C 0.029 3.971 7 C -0.121 4.121 8 C 0.249 3.751 9 O -0.595 6.595 10 C -0.519 4.519 11 H 0.062 0.938 12 C 0.066 3.934 13 N -0.901 5.901 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.053 3.947 19 H 0.098 0.902 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.382 0.618 31 H 0.266 0.734 32 H 0.078 0.922 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -9.630 -0.308 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.048 6.048 3 C -0.226 4.226 4 C -0.069 4.069 5 N -0.223 5.223 6 C -0.099 4.099 7 C -0.160 4.160 8 C 0.210 3.790 9 O -0.403 6.403 10 C -0.557 4.557 11 H 0.080 0.920 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.074 4.074 19 H 0.117 0.883 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.233 0.767 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.991 -10.756 -0.874 13.428 hybrid contribution -0.644 1.976 0.185 2.087 sum -8.635 -8.780 -0.689 12.334 Atomic orbital electron populations 1.23337 0.94251 1.06207 1.04924 1.86787 1.07251 1.12601 1.98126 1.23466 1.00784 0.92743 1.05604 1.21952 0.91985 0.91290 1.01659 1.65478 1.07498 1.07440 1.41844 1.23207 0.98617 0.96783 0.91255 1.22855 0.98092 0.95136 0.99868 1.19249 0.84208 0.89528 0.86064 1.86090 1.60350 1.37214 1.56690 1.21612 1.47640 0.91309 0.95186 0.91991 1.25004 0.94292 0.98209 0.96017 1.69691 1.50186 1.13703 1.20582 0.86531 0.79054 0.79338 0.82337 1.20156 1.21310 1.20160 1.23021 0.87012 0.97847 0.99546 0.88281 0.90594 0.90498 0.89971 0.89172 0.90122 0.94302 0.95217 0.91655 0.93044 0.90581 0.76740 0.92429 0.90331 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.76 101.05 1.09 0.02 16 2 S -0.27 -3.44 22.38 -107.50 -2.41 -5.85 16 3 C -0.08 -1.07 5.66 37.16 0.21 -0.86 16 4 C 0.06 0.98 5.07 -3.82 -0.02 0.96 16 5 N -0.50 -9.77 5.49 -229.82 -1.26 -11.03 16 6 C 0.03 0.57 5.12 -2.09 -0.01 0.56 16 7 C -0.12 -2.81 5.55 -25.35 -0.14 -2.95 16 8 C 0.25 6.27 1.05 -90.39 -0.10 6.17 16 9 O -0.59 -15.62 12.94 -35.23 -0.46 -16.08 16 10 C -0.52 -14.10 8.10 -34.44 -0.28 -14.38 16 11 H 0.06 1.69 7.53 -52.49 -0.40 1.30 16 12 C 0.07 1.76 5.02 -17.82 -0.09 1.67 16 13 N -0.90 -24.24 10.82 55.43 0.60 -23.64 16 14 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.05 1.18 5.77 -2.18 -0.01 1.17 16 19 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 21 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 22 H 0.08 1.11 6.84 -51.92 -0.36 0.76 16 23 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 26 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 27 H 0.07 1.15 7.68 -51.93 -0.40 0.76 16 28 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 29 H 0.08 1.93 7.23 -51.93 -0.38 1.55 16 30 H 0.38 10.12 7.33 45.56 0.33 10.45 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.08 1.74 7.67 -51.93 -0.40 1.34 16 33 H 0.03 0.71 7.76 -51.93 -0.40 0.31 16 LS Contribution 279.50 15.07 4.21 4.21 Total: -1.00 -27.61 279.50 -8.16 -35.78 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.48 Total: 8.29 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 0.65 Total: -7.64 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.66 Total: -34.66 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.46 Total: -16.08 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.41 Total: -5.85 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.61 -8.16 -35.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147139.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.790 kcal (2) G-P(sol) polarization free energy of solvation -27.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds