Wall clock time and date at job start Thu Apr 9 2020 12:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 110.27426 * 57.91020 * 9 7 2 11 11 C 1.54597 * 110.30708 * 295.71637 * 9 7 2 12 12 C 1.54937 * 102.92462 * 219.12443 * 11 9 7 13 13 N 1.48539 * 103.22274 * 37.41216 * 12 11 9 14 14 C 1.46900 * 110.99941 * 200.27849 * 13 12 11 15 15 C 1.53001 * 109.47133 * 307.39783 * 14 13 12 16 16 C 1.53001 * 109.46741 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46741 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.46913 * 179.97438 * 17 16 15 19 19 C 1.47901 * 105.82046 * 320.79537 * 13 12 11 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 0.96703 * 114.00355 * 300.70114 * 10 9 7 22 22 H 1.09004 * 110.72659 * 337.48631 * 11 9 7 23 23 H 1.09005 * 110.72577 * 100.77084 * 11 9 7 24 24 H 1.09000 * 110.66656 * 278.98674 * 12 11 9 25 25 H 1.08998 * 110.81602 * 155.91435 * 12 11 9 26 26 H 1.08999 * 109.46837 * 67.40287 * 14 13 12 27 27 H 1.09001 * 109.47046 * 187.39832 * 14 13 12 28 28 H 1.08997 * 109.46970 * 299.99754 * 15 14 13 29 29 H 1.09001 * 109.47115 * 60.00091 * 15 14 13 30 30 H 1.08991 * 109.47751 * 300.00255 * 16 15 14 31 31 H 1.09000 * 109.47056 * 60.00800 * 16 15 14 32 32 H 1.08999 * 109.47671 * 300.00159 * 17 16 15 33 33 H 1.09001 * 109.47115 * 60.00257 * 17 16 15 34 34 H 1.08997 * 109.91359 * 265.97067 * 19 13 12 35 35 H 1.09004 * 109.91438 * 144.67975 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3820 -2.5692 -1.1380 11 6 0.4434 -2.6525 1.3035 12 6 0.6094 -4.1559 1.6391 13 7 2.0111 -4.4407 1.2383 14 6 2.2161 -5.8799 1.0270 15 6 1.7394 -6.6495 2.2605 16 6 1.9523 -8.1485 2.0401 17 6 1.4750 -8.9181 3.2733 18 9 1.6692 -10.2888 3.0716 19 6 2.2344 -3.6842 -0.0128 20 1 -0.4849 0.8401 0.0041 21 1 -0.2737 -1.8594 -1.1750 22 1 0.8672 -2.0319 2.0930 23 1 -0.6061 -2.4074 1.1403 24 1 -0.0872 -4.7592 1.0570 25 1 0.4710 -4.3323 2.7058 26 1 1.6482 -6.2036 0.1548 27 1 3.2759 -6.0758 0.8637 28 1 2.3074 -6.3258 3.1326 29 1 0.6796 -6.4536 2.4238 30 1 1.3842 -8.4719 1.1680 31 1 3.0120 -8.3447 1.8766 32 1 2.0428 -8.5948 4.1457 33 1 0.4153 -8.7218 3.4364 34 1 2.0390 -4.3239 -0.8734 35 1 3.2597 -3.3156 -0.0459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154182.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:54 Heat of formation + Delta-G solvation = -115.308790 kcal Electronic energy + Delta-G solvation = -16545.137673 eV Core-core repulsion = 13684.651946 eV Total energy + Delta-G solvation = -2860.485728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.71200 -38.55021 -35.72761 -33.80222 -32.06082 -30.13691 -28.20367 -27.02949 -24.41234 -22.78562 -21.59975 -19.88932 -19.30394 -17.08713 -16.55117 -15.84497 -15.59072 -15.10238 -14.78614 -14.61261 -14.13764 -13.88125 -13.27359 -12.71640 -12.25983 -12.05768 -11.89674 -11.61345 -11.27155 -11.21516 -11.04345 -10.85384 -10.66106 -10.58037 -10.48859 -10.42510 -10.25618 -9.90522 -9.15644 -8.56769 -8.09594 -7.77587 -6.18803 -4.24579 3.24861 3.31771 3.35831 4.27988 4.34823 4.62712 4.71290 4.84632 5.05393 5.09240 5.20924 5.41887 5.61027 5.70217 5.74372 5.78079 5.94487 6.01837 6.10741 6.21025 6.26989 6.33725 6.46238 6.50876 6.93646 7.06557 7.29690 7.52323 7.66497 7.73424 7.86493 8.18185 8.76940 9.42335 9.54242 10.89104 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.063316 B = 0.004841 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.118575 B = 5782.741747 C = 5840.150675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.595 6.595 11 C -0.119 4.119 12 C 0.031 3.969 13 N -0.516 5.516 14 C 0.047 3.953 15 C -0.117 4.117 16 C -0.151 4.151 17 C 0.061 3.939 18 F -0.224 7.224 19 C 0.054 3.946 20 H 0.266 0.734 21 H 0.383 0.617 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -11.276 4.998 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.096 4.096 13 N -0.240 5.240 14 C -0.081 4.081 15 C -0.155 4.155 16 C -0.190 4.190 17 C 0.006 3.994 18 F -0.205 7.205 19 C -0.074 4.074 20 H 0.076 0.924 21 H 0.235 0.765 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.714 -11.557 5.263 12.814 hybrid contribution -0.467 1.105 -0.494 1.297 sum 1.247 -10.452 4.769 11.556 Atomic orbital electron populations 1.69620 1.05972 1.27377 1.51167 1.25014 0.94994 0.99460 0.93892 0.86456 0.79880 0.82684 0.78176 1.20561 1.21145 1.19750 1.21717 0.93548 0.90654 1.50694 0.91977 1.19359 0.86228 0.91581 0.82588 1.86084 1.50705 1.55296 1.48438 1.22990 1.00715 0.91613 1.00476 1.23291 0.88582 0.98839 0.98937 1.64849 1.23491 1.05488 1.30183 1.22251 1.00738 0.89199 0.95935 1.21547 1.02077 0.92457 0.99400 1.22142 1.02815 0.95988 0.98010 1.22041 1.02435 0.75553 0.99385 1.92751 1.96915 1.34210 1.96617 1.22876 1.00542 0.95080 0.88879 0.92369 0.76533 0.91409 0.91785 0.94960 0.91724 0.95128 0.91197 0.90838 0.91500 0.90944 0.90749 0.90728 0.90831 0.94628 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 10.89 55.43 0.60 -23.58 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.71 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.32 8.10 -34.44 -0.28 -14.60 16 8 H 0.06 1.68 7.34 -52.49 -0.39 1.30 16 9 C 0.24 6.09 0.99 -90.42 -0.09 6.01 16 10 O -0.60 -15.72 12.92 -35.23 -0.46 -16.18 16 11 C -0.12 -2.77 5.50 -24.87 -0.14 -2.91 16 12 C 0.03 0.60 5.11 -1.89 -0.01 0.59 16 13 N -0.52 -9.93 5.40 -230.45 -1.24 -11.17 16 14 C 0.05 0.73 5.03 -3.82 -0.02 0.71 16 15 C -0.12 -1.42 4.87 -26.73 -0.13 -1.55 16 16 C -0.15 -1.55 5.67 -26.73 -0.15 -1.70 16 17 C 0.06 0.57 7.55 37.16 0.28 0.85 16 18 F -0.22 -2.65 17.36 2.25 0.04 -2.61 16 19 C 0.05 1.19 6.17 -2.76 -0.02 1.17 16 20 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 21 H 0.38 10.25 7.07 45.56 0.32 10.58 16 22 H 0.07 1.66 7.86 -51.93 -0.41 1.26 16 23 H 0.06 1.54 8.06 -51.93 -0.42 1.12 16 24 H 0.03 0.61 8.00 -51.93 -0.42 0.20 16 25 H 0.06 1.11 7.65 -51.93 -0.40 0.71 16 26 H 0.03 0.49 7.81 -51.93 -0.41 0.08 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.82 6.79 -51.93 -0.35 0.47 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.78 7.39 -51.93 -0.38 0.40 16 35 H 0.08 1.74 7.39 -51.93 -0.38 1.36 16 LS Contribution 284.20 15.07 4.28 4.28 Total: -1.00 -27.89 284.20 -7.34 -35.23 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.90 Total: 7.96 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.65 Total: -9.72 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.64 Total: -34.76 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.46 Total: -16.18 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.89 -7.34 -35.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154182.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.077 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds