Wall clock time and date at job start Thu Apr 9 2020 12:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47302 * 2 1 4 4 C 1.36940 * 119.99529 * 269.50201 * 3 2 1 5 5 H 1.07998 * 120.00283 * 325.95955 * 4 3 2 6 6 C 1.38814 * 119.99812 * 145.96278 * 4 3 2 7 7 N 1.31622 * 119.99671 * 336.73305 * 6 4 3 8 8 Si 1.86797 * 120.00094 * 156.73577 * 6 4 3 9 9 H 1.48500 * 109.46839 * 59.99873 * 8 6 4 10 10 H 1.48504 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47241 * 300.00107 * 8 6 4 12 12 C 1.46493 * 120.00325 * 89.50042 * 3 2 1 13 13 C 1.50702 * 109.46954 * 89.99969 * 12 3 2 14 14 C 1.38505 * 119.54400 * 95.02363 * 13 12 3 15 15 C 1.38653 * 119.37868 * 179.97438 * 14 13 12 16 16 C 1.38533 * 118.50979 * 359.75151 * 15 14 13 17 17 C 1.39415 * 119.05011 * 0.48869 * 16 15 14 18 18 C 1.43206 * 119.73382 * 179.77406 * 17 16 15 19 19 N 6.09551 * 133.09196 * 111.59749 * 2 1 3 20 20 N 1.31562 * 119.54313 * 274.99979 * 13 12 3 21 21 H 1.09005 * 109.46956 * 59.99697 * 1 2 3 22 22 H 1.08997 * 109.47673 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46690 * 300.00450 * 1 2 3 24 24 H 1.09000 * 109.46690 * 239.99550 * 2 1 3 25 25 H 1.09002 * 109.46287 * 120.00006 * 2 1 3 26 26 H 0.97003 * 119.99587 * 180.02562 * 7 6 4 27 27 H 1.09006 * 109.47247 * 330.00444 * 12 3 2 28 28 H 1.08996 * 109.47674 * 209.99849 * 12 3 2 29 29 H 1.07999 * 120.31040 * 359.95798 * 14 13 12 30 30 H 1.08007 * 120.74408 * 179.97438 * 15 14 13 31 31 H 1.08003 * 120.47604 * 180.26532 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2564 2.0232 -1.1859 5 1 2.6232 1.4679 -2.0365 6 6 2.0261 3.3878 -1.2948 7 7 1.1831 3.9803 -0.4759 8 14 2.9126 4.3831 -2.6036 9 1 2.5677 3.8527 -3.9470 10 1 2.4953 5.8053 -2.5112 11 1 4.3792 4.2824 -2.3932 12 6 2.2522 2.0755 1.2686 13 6 3.6719 1.8399 1.7159 14 6 4.6494 2.7703 1.4043 15 6 5.9544 2.5504 1.8181 16 6 6.2348 1.4010 2.5387 17 6 5.2024 0.5049 2.8125 18 6 5.4767 -0.6902 3.5522 19 7 5.6943 -1.6385 4.1388 20 7 3.9655 0.7536 2.3975 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.0219 4.9338 -0.5522 27 1 1.5652 1.6936 2.0238 28 1 2.0864 3.1443 1.1338 29 1 4.3977 3.6586 0.8441 30 1 6.7341 3.2611 1.5869 31 1 7.2394 1.2001 2.8804 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602448908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:21 Heat of formation + Delta-G solvation = 84.549317 kcal Electronic energy + Delta-G solvation = -15555.375187 eV Core-core repulsion = 13030.784839 eV Total energy + Delta-G solvation = -2524.590348 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92001 -36.51845 -35.83148 -32.31878 -31.88633 -31.70720 -28.84154 -26.27781 -24.41580 -23.69053 -21.90433 -20.26349 -18.62527 -16.96141 -15.91603 -15.73270 -14.84352 -14.55824 -14.08339 -13.86770 -13.69883 -13.02185 -12.95907 -12.57876 -12.49841 -12.26191 -11.95302 -11.34899 -11.27868 -11.13215 -10.73819 -10.52180 -10.20358 -10.15008 -9.80588 -9.56066 -9.20319 -8.63725 -8.54435 -6.78477 -5.95584 -3.45426 0.96864 1.58872 2.70889 3.11703 3.27323 3.34736 3.36667 3.81049 4.23913 4.39664 4.95345 5.12576 5.22847 5.38335 5.40990 5.56413 5.78210 6.07485 6.15997 6.28460 6.45371 6.46184 6.54155 6.72366 6.81372 6.98701 7.01415 7.25566 7.42405 7.53127 7.70270 8.29555 8.37904 9.02105 9.65544 10.23628 11.05842 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.009035 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.835040 B = 3098.355646 C = 3897.160547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 N -0.571 5.571 4 C -0.256 4.256 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.882 5.882 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.281 1.281 12 C 0.182 3.818 13 C 0.145 3.855 14 C -0.122 4.122 15 C -0.083 4.083 16 C -0.144 4.144 17 C 0.171 3.829 18 C 0.282 3.718 19 N -0.417 5.417 20 N -0.451 5.451 21 H 0.054 0.946 22 H 0.031 0.969 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.258 0.742 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -0.060 3.463 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 N -0.290 5.290 4 C -0.385 4.385 5 H 0.081 0.919 6 C -0.190 4.190 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.207 1.207 12 C 0.054 3.946 13 C 0.002 3.998 14 C -0.144 4.144 15 C -0.108 4.108 16 C -0.167 4.167 17 C 0.032 3.968 18 C -0.035 4.035 19 N -0.094 5.094 20 N -0.163 5.163 21 H 0.073 0.927 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.137 0.863 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.040 -1.960 4.526 7.798 hybrid contribution 1.086 1.515 -1.202 2.217 sum 7.126 -0.445 3.324 7.876 Atomic orbital electron populations 1.22231 0.99348 0.98538 1.01891 1.20928 0.92065 0.86722 0.98794 1.43776 1.73205 1.10497 1.01503 1.19112 1.37550 0.91440 0.90427 0.91870 1.25081 0.97205 0.98509 0.98204 1.69958 1.32074 1.10677 1.39742 0.86512 0.80073 0.79213 0.81995 1.20610 1.21423 1.20730 1.20184 0.84917 1.02597 0.86917 1.23188 1.01071 0.86862 0.88719 1.22372 0.92913 1.01055 0.98100 1.21506 0.97147 0.96392 0.95802 1.21739 0.99137 0.95088 1.00782 1.16424 0.91311 0.90066 0.98953 1.25255 0.92929 0.92352 0.92965 1.81173 1.08457 1.10128 1.09652 1.67577 1.18157 1.20671 1.09848 0.92710 0.94951 0.93658 0.94100 0.93838 0.93156 0.93406 0.86326 0.84099 0.84547 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 37.16 0.38 -2.79 16 2 C 0.14 2.97 6.39 -4.04 -0.03 2.94 16 3 N -0.57 -13.35 2.43 -174.61 -0.43 -13.78 16 4 C -0.26 -6.45 9.48 -15.06 -0.14 -6.59 16 5 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 6 C 0.01 0.26 4.94 -17.43 -0.09 0.17 16 7 N -0.88 -22.91 11.34 55.49 0.63 -22.28 16 8 Si 0.89 19.66 29.61 -169.99 -5.03 14.62 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 C 0.18 3.96 5.60 -5.20 -0.03 3.93 16 13 C 0.14 2.79 6.36 -82.61 -0.53 2.27 16 14 C -0.12 -2.08 9.72 -39.33 -0.38 -2.46 16 15 C -0.08 -1.12 10.17 -39.32 -0.40 -1.52 16 16 C -0.14 -1.92 9.80 -39.03 -0.38 -2.30 16 17 C 0.17 2.77 6.58 -85.07 -0.56 2.21 16 18 C 0.28 4.57 15.53 -22.47 -0.35 4.22 16 19 N -0.42 -7.14 18.54 41.84 0.78 -6.37 16 20 N -0.45 -8.49 10.19 -7.40 -0.08 -8.56 16 21 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 25 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 27 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 28 H 0.12 2.80 5.23 -51.93 -0.27 2.53 16 29 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 30 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 282.49 15.07 4.26 4.26 Total: -1.00 -26.91 282.49 -5.99 -32.90 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -3.62 Total: -0.86 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.50 Total: 0.07 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.90 Total: -50.99 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.91 -5.99 -32.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.446 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds