Wall clock time and date at job start Thu Apr 9 2020 12:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99832 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47121 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47264 * 65.00078 * 12 11 10 14 14 C 1.47845 * 110.99468 * 290.84180 * 13 12 11 15 15 C 1.54911 * 104.79694 * 213.63615 * 14 13 12 16 16 C 1.55138 * 101.65002 * 37.07063 * 15 14 13 17 17 H 1.09005 * 110.70877 * 82.73177 * 16 15 14 18 18 C 1.53004 * 110.85556 * 205.89694 * 16 15 14 19 19 F 1.39897 * 109.47085 * 178.68982 * 18 16 15 20 20 C 1.47437 * 111.00099 * 170.00424 * 13 12 11 21 21 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 23 23 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 24 24 H 1.09001 * 109.47258 * 299.99776 * 11 10 9 25 25 H 1.08995 * 109.47535 * 59.99536 * 11 10 9 26 26 H 1.09005 * 109.46944 * 184.99583 * 12 11 10 27 27 H 1.08993 * 109.47325 * 304.99454 * 12 11 10 28 28 H 1.09002 * 110.37733 * 332.46239 * 14 13 12 29 29 H 1.09005 * 110.37429 * 94.80446 * 14 13 12 30 30 H 1.08998 * 110.98718 * 278.97839 * 15 14 13 31 31 H 1.09000 * 111.02626 * 155.17559 * 15 14 13 32 32 H 1.09001 * 109.46414 * 298.68692 * 18 16 15 33 33 H 1.08996 * 109.47098 * 58.68335 * 18 16 15 34 34 H 1.09007 * 109.88188 * 242.66149 * 20 13 12 35 35 H 1.08996 * 109.89263 * 3.84469 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9880 -2.5413 -0.0001 11 6 5.4125 -2.6540 0.0010 12 6 5.8070 -4.1323 0.0015 13 7 5.3687 -4.7565 -1.2541 14 6 3.8946 -4.8535 -1.3111 15 6 3.6141 -6.1626 -2.0903 16 6 4.7501 -7.0842 -1.5737 17 1 4.4764 -7.5359 -0.6201 18 6 5.0869 -8.1637 -2.6044 19 9 6.1327 -8.9583 -2.1227 20 6 5.9342 -6.1106 -1.3965 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6796 -0.8894 23 1 3.8746 -0.6807 0.8905 24 1 5.8160 -2.1702 -0.8885 25 1 5.8146 -2.1708 0.8914 26 1 6.8898 -4.2193 0.0918 27 1 5.3307 -4.6352 0.8429 28 1 3.4791 -4.9143 -0.3052 29 1 3.4783 -3.9983 -1.8435 30 1 3.6991 -6.0030 -3.1652 31 1 2.6353 -6.5682 -1.8341 32 1 4.2089 -8.7856 -2.7793 33 1 5.3899 -7.6917 -3.5390 34 1 6.5822 -6.1516 -2.2720 35 1 6.4989 -6.3727 -0.5019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711447567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:32 Heat of formation + Delta-G solvation = -122.865124 kcal Electronic energy + Delta-G solvation = -16440.573621 eV Core-core repulsion = 13579.760227 eV Total energy + Delta-G solvation = -2860.813395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.53867 -40.19645 -38.39388 -35.00779 -34.13318 -30.85463 -30.32092 -28.96765 -25.97077 -24.06396 -23.39018 -21.80281 -21.31534 -19.04636 -17.52802 -17.43600 -17.37773 -16.52370 -16.46619 -16.28415 -15.84054 -15.17102 -14.95535 -14.56545 -14.47289 -14.05093 -13.72272 -13.24596 -13.12753 -12.97613 -12.50042 -12.39754 -12.27354 -11.92918 -11.84662 -11.79132 -11.56913 -11.49168 -11.27325 -10.91941 -10.30841 -9.28672 -8.37111 -6.44223 1.33020 1.35552 1.46590 2.29197 2.95881 3.00948 3.10921 3.43677 3.54471 3.74037 4.10013 4.19504 4.24303 4.32550 4.40026 4.47989 4.49985 4.55429 4.65350 4.68249 4.71829 4.87486 4.92236 5.01266 5.03462 5.07662 5.25092 5.32548 5.45129 5.94105 6.01881 6.14557 6.59435 6.75989 7.20357 8.79851 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.049838 B = 0.005082 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.682475 B = 5508.614340 C = 5919.967577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.180 3.820 10 O -0.397 6.397 11 C 0.052 3.948 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.060 3.940 15 C -0.117 4.117 16 C -0.138 4.138 17 H 0.081 0.919 18 C 0.075 3.925 19 F -0.233 7.233 20 C 0.047 3.953 21 H 0.272 0.728 22 H 0.007 0.993 23 H 0.008 0.992 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.570 -12.279 -4.123 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.577 4.577 8 H 0.050 0.950 9 C 0.104 3.896 10 O -0.316 6.316 11 C -0.025 4.025 12 C -0.069 4.069 13 N -0.262 5.262 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.158 4.158 17 H 0.100 0.900 18 C 0.020 3.980 19 F -0.214 7.214 20 C -0.080 4.080 21 H 0.081 0.919 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.130 0.870 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.506 -12.026 -4.505 18.636 hybrid contribution -0.393 0.549 0.936 1.154 sum 13.113 -11.477 -3.569 17.788 Atomic orbital electron populations 1.70025 1.08181 1.28693 1.51269 1.25787 0.95738 1.03246 0.93566 0.85646 0.79422 0.77813 0.79694 1.18474 1.19868 1.17167 1.21124 0.90810 0.93785 1.52011 0.94977 1.20275 0.93326 0.81322 0.94702 1.87910 1.20875 1.27687 1.95178 1.22655 0.82205 0.97308 1.00293 1.22374 1.01162 0.92872 0.90474 1.63582 1.08236 1.19914 1.34480 1.22806 0.87452 0.97739 0.98768 1.22714 0.98290 0.93482 1.01016 1.22969 0.96442 0.96196 1.00195 0.90024 1.22080 0.88221 0.90990 0.96692 1.92732 1.61683 1.76496 1.90490 1.22923 0.96545 0.86214 1.02365 0.91856 0.97484 0.97474 0.93201 0.92401 0.87017 0.94789 0.95195 0.92431 0.89394 0.89872 0.88690 0.88946 0.89550 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.01 0.86 5.47 84.65 0.46 1.32 16 3 Si 0.95 43.58 27.47 68.60 1.88 45.47 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.54 -32.73 9.99 25.60 0.26 -32.47 16 8 H 0.03 2.18 8.06 -2.92 -0.02 2.16 16 9 C 0.18 9.04 4.76 71.24 0.34 9.38 16 10 O -0.40 -18.20 7.67 -148.98 -1.14 -19.34 16 11 C 0.05 1.80 6.23 71.98 0.45 2.25 16 12 C 0.06 1.69 5.13 86.30 0.44 2.13 16 13 N -0.54 -15.70 5.16 -885.53 -4.57 -20.27 16 14 C 0.06 1.99 5.07 86.77 0.44 2.43 16 15 C -0.12 -2.77 6.53 31.98 0.21 -2.56 16 16 C -0.14 -2.80 3.29 -9.61 -0.03 -2.83 16 17 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 18 C 0.08 1.19 6.85 71.98 0.49 1.68 16 19 F -0.23 -4.81 17.23 44.97 0.77 -4.03 16 20 C 0.05 1.06 6.35 86.65 0.55 1.61 16 21 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 22 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 23 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 2.44 8.03 -2.38 -0.02 2.42 16 27 H 0.03 1.02 7.85 -2.39 -0.02 1.00 16 28 H 0.03 1.13 7.21 -2.39 -0.02 1.11 16 29 H 0.06 2.32 7.60 -2.38 -0.02 2.30 16 30 H 0.09 1.87 8.05 -2.39 -0.02 1.86 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.09 1.78 7.79 -2.38 -0.02 1.76 16 35 H 0.06 1.30 7.55 -2.39 -0.02 1.28 16 Total: -1.00 -69.00 285.93 1.84 -67.16 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.99 Total: 6.97 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 3.61 Total: -17.05 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -4.27 Total: -79.17 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.14 Total: -19.34 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.77 Total: -4.03 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Total: -69.00 1.84 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711447567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.706 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds