Wall clock time and date at job start Thu Apr 9 2020 12:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40850 * 126.72430 * 2 1 4 4 C 1.36676 * 103.91614 * 180.10165 * 3 2 1 5 5 N 1.38256 * 126.89017 * 179.87798 * 4 3 2 6 6 S 1.65597 * 120.00023 * 134.98818 * 5 4 3 7 7 O 1.42096 * 106.40195 * 178.26200 * 6 5 4 8 8 O 1.42108 * 106.40105 * 311.18256 * 6 5 4 9 9 C 1.76199 * 107.22117 * 64.71957 * 6 5 4 10 10 H 1.08002 * 120.00179 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00184 * 180.02562 * 9 6 5 12 12 N 1.31521 * 120.00165 * 180.02562 * 11 9 6 13 13 Si 1.86802 * 120.00205 * 0.02562 * 11 9 6 14 14 H 1.48497 * 109.46987 * 89.99899 * 13 11 9 15 15 H 1.48500 * 109.47244 * 210.00008 * 13 11 9 16 16 H 1.48498 * 109.46529 * 330.00134 * 13 11 9 17 17 O 1.34252 * 106.21908 * 359.61017 * 4 3 2 18 18 N 1.20905 * 111.46992 * 0.26908 * 17 4 3 19 19 H 1.08998 * 109.47336 * 270.31611 * 1 2 3 20 20 H 1.09002 * 109.47249 * 30.32416 * 1 2 3 21 21 H 1.09005 * 109.47016 * 150.32327 * 1 2 3 22 22 H 1.08005 * 128.04192 * 359.97438 * 3 2 1 23 23 H 0.97001 * 119.99691 * 314.70368 * 5 4 3 24 24 H 0.96998 * 119.99908 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3492 1.1289 0.0000 4 6 3.6091 0.5991 -0.0024 5 7 4.8028 1.2967 -0.0057 6 16 6.0315 0.8400 1.0063 7 8 7.1185 1.7149 0.7377 8 8 5.4543 0.6906 2.2962 9 6 6.5505 -0.7672 0.5044 10 1 6.0688 -1.2541 -0.3307 11 6 7.5718 -1.4034 1.1776 12 7 7.9595 -2.6029 0.8026 13 14 8.4047 -0.5618 2.6224 14 1 7.6927 -0.9129 3.8773 15 1 9.8166 -1.0132 2.7114 16 1 8.3668 0.9098 2.4268 17 8 3.4551 -0.7345 0.0052 18 7 2.2866 -1.0450 0.0063 19 1 -0.3634 0.0057 1.0276 20 1 -0.3634 0.8871 -0.5189 21 1 -0.3633 -0.8929 -0.5088 22 1 2.0654 2.1710 -0.0004 23 1 4.9220 2.0511 -0.6037 24 1 8.6777 -3.0507 1.2766 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509354.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:37 Heat of formation + Delta-G solvation = -14.768523 kcal Electronic energy + Delta-G solvation = -14521.104998 eV Core-core repulsion = 11758.267005 eV Total energy + Delta-G solvation = -2762.837993 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 232.035 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.49641 -35.96059 -35.48156 -34.71502 -34.47086 -33.09771 -29.49311 -28.50031 -26.50805 -22.90464 -21.20731 -19.19772 -18.14322 -17.83348 -17.05556 -16.68770 -15.86713 -15.14410 -14.25955 -13.77510 -13.44759 -13.27232 -12.96591 -12.86940 -12.65169 -12.01542 -11.50294 -11.48538 -10.98333 -10.88258 -10.67269 -10.54451 -9.98831 -9.75427 -9.27032 -9.13983 -8.47696 -6.85252 -5.42722 1.50891 1.85077 2.49460 2.98259 3.05424 3.13960 3.20799 3.89428 4.25999 4.40152 4.52871 4.89812 5.08749 5.35091 5.51999 5.54747 5.62706 5.83579 5.95759 6.16965 6.34242 7.14743 7.41685 8.16672 8.58677 8.63768 10.26796 Molecular weight = 232.03amu Principal moments of inertia in cm(-1) A = 0.043764 B = 0.009713 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.634826 B = 2882.111525 C = 3197.696071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.022 3.978 3 C -0.259 4.259 4 C 0.234 3.766 5 N -1.010 6.010 6 S 2.653 3.347 7 O -0.987 6.987 8 O -0.990 6.990 9 C -1.008 5.008 10 H 0.129 0.871 11 C 0.156 3.844 12 N -0.814 5.814 13 Si 0.800 3.200 14 H -0.244 1.244 15 H -0.252 1.252 16 H -0.221 1.221 17 O 0.105 5.895 18 N -0.361 5.361 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.173 0.827 23 H 0.432 0.568 24 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 6.833 -2.280 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 C -0.287 4.287 4 C 0.072 3.928 5 N -0.764 5.764 6 S 2.756 3.244 7 O -0.978 6.978 8 O -0.979 6.979 9 C -1.143 5.143 10 H 0.147 0.853 11 C -0.065 4.065 12 N -0.442 5.442 13 Si 0.620 3.380 14 H -0.168 1.168 15 H -0.176 1.176 16 H -0.144 1.144 17 O 0.042 5.958 18 N -0.069 5.069 19 H 0.098 0.902 20 H 0.098 0.902 21 H 0.093 0.907 22 H 0.190 0.810 23 H 0.270 0.730 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.554 5.758 -1.446 11.248 hybrid contribution 0.593 0.796 -0.147 1.004 sum -8.961 6.554 -1.592 11.216 Atomic orbital electron populations 1.20118 0.86040 1.03414 1.03251 1.23173 0.98688 0.88975 1.02830 1.22029 0.89947 1.01002 1.15693 1.20175 0.88511 0.83691 1.00425 1.52920 1.25399 1.40613 1.57456 1.02343 0.71583 0.77605 0.72843 1.93525 1.50118 1.69152 1.84966 1.93465 1.77505 1.88355 1.38594 1.30170 1.31108 1.22977 1.30078 0.85291 1.24377 0.93280 0.93801 0.95033 1.69977 1.24942 1.11663 1.37607 0.87886 0.82003 0.83965 0.84159 1.16811 1.17569 1.14363 1.85089 1.21720 1.21197 1.67747 1.73969 0.88512 1.23169 1.21278 0.90245 0.90225 0.90708 0.80985 0.73024 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.47 36.00 0.38 -0.36 14 2 C 0.02 0.34 7.31 -82.22 -0.60 -0.26 14 3 C -0.26 -3.99 11.15 -39.16 -0.44 -4.43 14 4 C 0.23 4.46 7.56 -15.22 -0.12 4.34 14 5 N -1.01 -18.94 5.84 30.82 0.18 -18.76 14 6 S 2.65 64.69 4.21 -107.50 -0.45 64.24 14 7 O -0.99 -25.02 16.02 -57.17 -0.92 -25.94 14 8 O -0.99 -26.24 16.55 -57.17 -0.95 -27.19 14 9 C -1.01 -27.86 9.81 30.60 0.30 -27.56 14 10 H 0.13 3.64 7.92 -52.49 -0.42 3.22 14 11 C 0.16 4.43 5.47 -17.82 -0.10 4.33 14 12 N -0.81 -23.30 13.96 55.43 0.77 -22.53 14 13 Si 0.80 20.14 26.54 -169.99 -4.51 15.63 14 14 H -0.24 -6.06 7.11 56.52 0.40 -5.65 14 15 H -0.25 -5.79 7.11 56.52 0.40 -5.39 14 16 H -0.22 -5.59 5.61 56.52 0.32 -5.27 14 17 O 0.10 2.25 10.67 16.62 0.18 2.43 14 18 N -0.36 -7.06 12.06 33.48 0.40 -6.66 14 19 H 0.08 0.75 8.14 -51.93 -0.42 0.32 14 20 H 0.08 0.62 8.14 -51.93 -0.42 0.20 14 21 H 0.07 0.74 8.14 -51.93 -0.42 0.31 14 22 H 0.17 1.96 8.06 -52.48 -0.42 1.54 14 23 H 0.43 6.17 8.95 -34.47 -0.31 5.86 14 24 H 0.28 7.31 8.31 -40.82 -0.34 6.97 14 LS Contribution 235.10 15.07 3.54 3.54 Total: -1.00 -33.11 235.10 -3.95 -37.07 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -1.63 Total: 2.11 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -0.57 Total: -23.94 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 1.36 Total: -47.95 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -1.68 Total: -50.70 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.51 Total: 15.63 kcal Atomic # 16 Polarization: 64.69 SS G_CDS: -0.45 Total: 64.24 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -33.11 -3.95 -37.07 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509354.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.300 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds