Wall clock time and date at job start Thu Apr 9 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40850 * 126.72430 * 2 1 4 4 C 1.36676 * 103.91614 * 180.10165 * 3 2 1 5 5 N 1.38256 * 126.89017 * 179.87798 * 4 3 2 6 6 S 1.65597 * 120.00023 * 134.98818 * 5 4 3 7 7 O 1.42096 * 106.40195 * 178.26200 * 6 5 4 8 8 O 1.42108 * 106.40105 * 311.18256 * 6 5 4 9 9 C 1.76199 * 107.22117 * 64.71957 * 6 5 4 10 10 H 1.08002 * 120.00179 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00184 * 180.02562 * 9 6 5 12 12 N 1.31521 * 120.00165 * 180.02562 * 11 9 6 13 13 Si 1.86802 * 120.00205 * 0.02562 * 11 9 6 14 14 H 1.48497 * 109.46987 * 89.99899 * 13 11 9 15 15 H 1.48500 * 109.47244 * 210.00008 * 13 11 9 16 16 H 1.48498 * 109.46529 * 330.00134 * 13 11 9 17 17 O 1.34252 * 106.21908 * 359.61017 * 4 3 2 18 18 N 1.20905 * 111.46992 * 0.26908 * 17 4 3 19 19 H 1.08998 * 109.47336 * 270.31611 * 1 2 3 20 20 H 1.09002 * 109.47249 * 30.32416 * 1 2 3 21 21 H 1.09005 * 109.47016 * 150.32327 * 1 2 3 22 22 H 1.08005 * 128.04192 * 359.97438 * 3 2 1 23 23 H 0.97001 * 119.99691 * 314.70368 * 5 4 3 24 24 H 0.96998 * 119.99908 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3492 1.1289 0.0000 4 6 3.6091 0.5991 -0.0024 5 7 4.8028 1.2967 -0.0057 6 16 6.0315 0.8400 1.0063 7 8 7.1185 1.7149 0.7377 8 8 5.4543 0.6906 2.2962 9 6 6.5505 -0.7672 0.5044 10 1 6.0688 -1.2541 -0.3307 11 6 7.5718 -1.4034 1.1776 12 7 7.9595 -2.6029 0.8026 13 14 8.4047 -0.5618 2.6224 14 1 7.6927 -0.9129 3.8773 15 1 9.8166 -1.0132 2.7114 16 1 8.3668 0.9098 2.4268 17 8 3.4551 -0.7345 0.0052 18 7 2.2866 -1.0450 0.0063 19 1 -0.3634 0.0057 1.0276 20 1 -0.3634 0.8871 -0.5189 21 1 -0.3633 -0.8929 -0.5088 22 1 2.0654 2.1710 -0.0004 23 1 4.9220 2.0511 -0.6037 24 1 8.6777 -3.0507 1.2766 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509354.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:36 Heat of formation + Delta-G solvation = -43.063103 kcal Electronic energy + Delta-G solvation = -14522.331943 eV Core-core repulsion = 11758.267005 eV Total energy + Delta-G solvation = -2764.064938 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 232.035 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.85296 -37.94313 -37.02638 -36.74226 -35.71517 -35.22843 -30.89161 -29.52006 -28.63280 -24.23267 -22.69576 -21.01034 -19.88539 -19.38067 -18.88244 -18.29596 -17.47725 -16.87726 -16.20284 -15.58577 -15.04452 -14.93734 -14.15687 -14.02318 -13.88964 -13.51177 -13.43820 -13.08483 -12.93094 -12.90434 -12.70136 -12.01781 -11.80204 -11.36771 -11.19687 -10.98462 -9.92778 -8.98675 -7.58951 -0.32439 0.41210 1.04147 1.14297 1.18333 1.28343 1.53025 1.87025 2.37921 2.58274 3.08517 3.28958 3.66803 3.97078 4.14525 4.39247 4.64412 4.80716 4.91984 5.00429 5.32762 5.34765 5.78821 5.98986 6.48469 7.21911 8.19388 Molecular weight = 232.03amu Principal moments of inertia in cm(-1) A = 0.043764 B = 0.009713 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.634826 B = 2882.111525 C = 3197.696071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.032 3.968 3 C -0.229 4.229 4 C 0.194 3.806 5 N -0.994 5.994 6 S 2.687 3.313 7 O -0.998 6.998 8 O -1.011 7.011 9 C -1.035 5.035 10 H 0.107 0.893 11 C 0.109 3.891 12 N -0.848 5.848 13 Si 0.826 3.174 14 H -0.241 1.241 15 H -0.215 1.215 16 H -0.222 1.222 17 O 0.053 5.947 18 N -0.396 5.396 19 H 0.095 0.905 20 H 0.115 0.885 21 H 0.079 0.921 22 H 0.219 0.781 23 H 0.451 0.549 24 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.272 8.693 -1.975 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.127 4.127 3 C -0.255 4.255 4 C 0.033 3.967 5 N -0.754 5.754 6 S 2.788 3.212 7 O -0.988 6.988 8 O -1.001 7.001 9 C -1.168 5.168 10 H 0.125 0.875 11 C -0.109 4.109 12 N -0.478 5.478 13 Si 0.642 3.358 14 H -0.164 1.164 15 H -0.137 1.137 16 H -0.145 1.145 17 O -0.003 6.003 18 N -0.111 5.111 19 H 0.113 0.887 20 H 0.134 0.866 21 H 0.098 0.902 22 H 0.236 0.764 23 H 0.294 0.706 24 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.965 7.617 -1.162 13.401 hybrid contribution 0.847 0.236 -0.336 0.941 sum -10.118 7.853 -1.497 12.895 Atomic orbital electron populations 1.20412 0.82121 1.05460 1.04864 1.24151 1.00949 0.87990 0.99594 1.22686 0.87849 1.02982 1.11970 1.20663 0.89394 0.83503 1.03126 1.52173 1.24576 1.41078 1.57537 1.01145 0.71700 0.75782 0.72577 1.93501 1.51534 1.68464 1.85317 1.93431 1.78106 1.88381 1.40184 1.30725 1.31029 1.25488 1.29548 0.87506 1.25188 0.94010 0.94478 0.97191 1.70013 1.26013 1.12730 1.39061 0.87479 0.83452 0.83212 0.81637 1.16404 1.13692 1.14459 1.85035 1.22963 1.22693 1.69600 1.73993 0.88416 1.25128 1.23524 0.88650 0.86645 0.90245 0.76394 0.70587 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.47 71.24 0.75 -0.46 14 2 C 0.03 0.93 7.31 43.41 0.32 1.24 14 3 C -0.23 -6.31 11.15 22.54 0.25 -6.06 14 4 C 0.19 7.21 7.56 83.32 0.63 7.84 14 5 N -0.99 -36.38 5.84 -166.78 -0.97 -37.35 14 6 S 2.69 130.44 4.21 -56.49 -0.24 130.20 14 7 O -1.00 -49.72 16.02 -128.00 -2.05 -51.78 14 8 O -1.01 -53.27 16.55 -128.00 -2.12 -55.39 14 9 C -1.03 -58.75 9.81 67.73 0.66 -58.09 14 10 H 0.11 6.35 7.92 -2.91 -0.02 6.33 14 11 C 0.11 6.28 5.47 84.65 0.46 6.74 14 12 N -0.85 -49.63 13.96 21.45 0.30 -49.33 14 13 Si 0.83 40.43 26.54 68.60 1.82 42.25 14 14 H -0.24 -11.55 7.11 99.48 0.71 -10.84 14 15 H -0.22 -9.20 7.11 99.48 0.71 -8.49 14 16 H -0.22 -10.88 5.61 99.48 0.56 -10.32 14 17 O 0.05 2.33 10.67 69.63 0.74 3.07 14 18 N -0.40 -15.42 12.06 -48.93 -0.59 -16.01 14 19 H 0.10 1.39 8.14 -2.39 -0.02 1.37 14 20 H 0.12 1.17 8.14 -2.39 -0.02 1.15 14 21 H 0.08 1.31 8.14 -2.38 -0.02 1.29 14 22 H 0.22 3.75 8.06 -2.91 -0.02 3.73 14 23 H 0.45 12.14 8.95 -96.74 -0.87 11.28 14 24 H 0.29 15.34 8.31 -92.71 -0.77 14.57 14 Total: -1.00 -73.24 235.10 0.19 -73.05 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.23 Total: 10.07 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 3.07 Total: -48.78 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -1.27 Total: -102.70 kcal Atomic # 8 Polarization: -100.66 SS G_CDS: -3.43 Total: -104.09 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.82 Total: 42.25 kcal Atomic # 16 Polarization: 130.44 SS G_CDS: -0.24 Total: 130.20 kcal Total: -73.24 0.19 -73.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509354.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.984 kcal (2) G-P(sol) polarization free energy of solvation -73.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds