Wall clock time and date at job start Thu Apr 9 2020 12:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38266 * 119.99633 * 2 1 4 4 C 1.38214 * 119.99638 * 180.27446 * 3 2 1 5 5 C 1.38254 * 120.00115 * 359.46916 * 4 3 2 6 6 C 1.38210 * 120.00093 * 0.25395 * 5 4 3 7 7 C 1.50696 * 120.00441 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47223 * 89.99412 * 7 6 5 9 9 C 1.36945 * 119.99705 * 90.00582 * 8 7 6 10 10 H 1.07996 * 119.99880 * 218.10962 * 9 8 7 11 11 C 1.38808 * 119.99813 * 38.10305 * 9 8 7 12 12 N 1.31621 * 120.00471 * 20.49809 * 11 9 8 13 13 Si 1.86803 * 119.99954 * 200.49591 * 11 9 8 14 14 H 1.48505 * 109.47125 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47299 * 120.00251 * 13 11 9 16 16 H 1.48500 * 109.47204 * 240.00400 * 13 11 9 17 17 C 1.46497 * 120.00516 * 270.00762 * 8 7 6 18 18 C 1.52996 * 117.49849 * 194.01405 * 17 8 7 19 19 C 1.52990 * 117.50217 * 125.35269 * 17 8 7 20 20 C 1.38204 * 120.00328 * 179.71815 * 2 1 3 21 21 H 1.09002 * 109.47236 * 270.28012 * 1 2 3 22 22 H 1.08997 * 109.47665 * 30.27802 * 1 2 3 23 23 H 1.09002 * 109.47370 * 150.28074 * 1 2 3 24 24 H 1.07996 * 119.99959 * 0.02562 * 3 2 1 25 25 H 1.08003 * 119.99990 * 179.74289 * 4 3 2 26 26 H 1.08003 * 119.99956 * 180.27732 * 5 4 3 27 27 H 1.08994 * 109.47625 * 209.99945 * 7 6 5 28 28 H 1.09007 * 109.46753 * 330.00034 * 7 6 5 29 29 H 0.96998 * 119.99919 * 174.96384 * 12 11 9 30 30 H 1.09003 * 115.54831 * 339.67477 * 17 8 7 31 31 H 1.09000 * 117.50038 * 359.97438 * 18 17 8 32 32 H 1.09008 * 117.49969 * 145.01938 * 18 17 8 33 33 H 1.09007 * 117.50278 * 214.98293 * 19 17 8 34 34 H 1.09005 * 117.50151 * 359.97438 * 19 17 8 35 35 H 1.07997 * 119.99932 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 -0.0057 5 6 4.2717 0.0002 -0.0004 6 6 3.5807 -1.1968 0.0054 7 6 4.3342 -2.5018 0.0118 8 7 4.5784 -2.9179 1.3951 9 6 3.6654 -3.7055 2.0445 10 1 3.4581 -3.5409 3.0915 11 6 3.0064 -4.7153 1.3569 12 7 3.5134 -5.1895 0.2386 13 14 1.3999 -5.4014 2.0186 14 1 1.0462 -4.7035 3.2809 15 1 0.3224 -5.1909 1.0186 16 1 1.5535 -6.8547 2.2823 17 6 5.7991 -2.4916 2.0838 18 6 6.1625 -3.2080 3.3858 19 6 5.6392 -1.7701 3.4233 20 6 2.1980 -1.1968 0.0059 21 1 -0.3634 0.0050 1.0277 22 1 -0.3634 0.8874 -0.5181 23 1 -0.3634 -0.8925 -0.5095 24 1 1.6582 2.1327 0.0004 25 1 4.1203 2.1328 -0.0099 26 1 5.3517 0.0003 -0.0003 27 1 3.7452 -3.2640 -0.4983 28 1 5.2867 -2.3739 -0.5026 29 1 3.0927 -5.9436 -0.2031 30 1 6.6181 -2.1768 1.4371 31 1 5.4931 -3.9963 3.7303 32 1 7.2207 -3.3641 3.5960 33 1 6.3532 -0.9806 3.6582 34 1 4.6257 -1.6121 3.7922 35 1 1.6581 -2.1321 0.0101 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052047189.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:55 Heat of formation + Delta-G solvation = 62.560972 kcal Electronic energy + Delta-G solvation = -16157.443102 eV Core-core repulsion = 13735.439611 eV Total energy + Delta-G solvation = -2422.003491 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.76547 -36.87255 -33.75925 -32.33664 -31.16941 -29.51608 -26.49898 -25.52708 -23.56065 -21.41995 -21.33457 -19.98378 -19.70572 -16.43313 -15.74978 -15.46194 -14.64901 -14.39246 -14.14536 -13.77638 -13.37937 -12.91842 -12.55330 -12.40692 -11.96334 -11.81859 -11.34835 -11.12537 -10.95823 -10.86502 -10.62758 -10.56833 -10.29551 -10.04340 -9.92752 -9.60612 -9.29179 -8.49081 -8.07663 -7.91309 -6.50100 -5.87456 -3.42638 2.03047 2.10744 3.29227 3.38884 3.42511 4.34178 4.47807 4.97640 5.29978 5.35035 5.37347 5.40615 5.63909 5.69403 5.91458 5.92742 5.96559 6.10435 6.13916 6.22629 6.26614 6.36923 6.50990 6.51944 6.62994 6.78788 6.84076 7.01434 7.10417 7.19575 7.22846 7.40549 7.64215 7.76476 7.79334 8.47505 9.10941 9.73077 10.30712 11.13557 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.011708 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.672643 B = 2390.881335 C = 3365.869339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.126 4.126 5 C -0.123 4.123 6 C -0.067 4.067 7 C 0.176 3.824 8 N -0.542 5.542 9 C -0.254 4.254 10 H 0.061 0.939 11 C 0.017 3.983 12 N -0.886 5.886 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.288 1.288 17 C 0.130 3.870 18 C -0.196 4.196 19 C -0.226 4.226 20 C -0.097 4.097 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.036 0.964 29 H 0.257 0.743 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 8.737 -0.886 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.161 4.161 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.070 4.070 7 C 0.050 3.950 8 N -0.257 5.257 9 C -0.384 4.384 10 H 0.079 0.921 11 C -0.183 4.183 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.215 1.215 17 C 0.020 3.980 18 C -0.235 4.235 19 C -0.267 4.267 20 C -0.116 4.116 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.021 8.581 -1.067 8.707 hybrid contribution -0.805 -0.317 0.563 1.032 sum -1.826 8.264 -0.505 8.478 Atomic orbital electron populations 1.20727 0.92182 1.01920 1.01781 1.19863 0.95418 0.93542 1.00959 1.20746 0.94202 0.96712 1.04436 1.20945 0.94200 0.97470 1.01830 1.20985 0.99198 0.92261 1.01767 1.21175 0.94268 0.97356 0.94166 1.20069 0.96974 0.91106 0.86822 1.43306 1.17095 1.54390 1.10861 1.18946 1.15005 1.09209 0.95252 0.92146 1.25193 0.99584 0.96036 0.97533 1.69896 1.39369 1.24155 1.19386 0.86358 0.83971 0.78591 0.78786 1.19950 1.21160 1.21466 1.21090 0.90519 0.99668 0.86672 1.23086 0.99524 0.95531 1.05364 1.23343 1.01053 0.94260 1.08041 1.20973 0.94230 0.96889 0.99543 0.91743 0.92332 0.91887 0.87433 0.87335 0.87207 0.87717 0.94589 0.93245 0.89536 0.88340 0.90833 0.91036 0.89834 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 36.00 0.36 -1.22 16 2 C -0.10 -1.73 5.88 -104.63 -0.62 -2.35 16 3 C -0.14 -2.33 9.70 -39.58 -0.38 -2.72 16 4 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 5 C -0.12 -2.28 9.70 -39.59 -0.38 -2.66 16 6 C -0.07 -1.40 5.46 -104.62 -0.57 -1.97 16 7 C 0.18 4.07 5.46 -5.20 -0.03 4.04 16 8 N -0.54 -13.25 2.76 -167.03 -0.46 -13.71 16 9 C -0.25 -6.75 8.04 -15.06 -0.12 -6.88 16 10 H 0.06 1.65 7.23 -52.49 -0.38 1.27 16 11 C 0.02 0.46 4.97 -17.43 -0.09 0.37 16 12 N -0.89 -24.58 11.45 55.49 0.64 -23.95 16 13 Si 0.89 21.11 29.60 -169.99 -5.03 16.08 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.13 2.81 6.61 -67.94 -0.45 2.36 16 18 C -0.20 -3.99 9.81 -26.70 -0.26 -4.25 16 19 C -0.23 -4.48 10.09 -26.70 -0.27 -4.75 16 20 C -0.10 -2.00 9.36 -39.58 -0.37 -2.37 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 23 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 24 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 25 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 26 H 0.11 1.88 8.06 -52.48 -0.42 1.45 16 27 H 0.11 2.71 5.46 -51.93 -0.28 2.43 16 28 H 0.04 0.79 7.98 -51.93 -0.41 0.37 16 29 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 30 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 31 H 0.10 2.21 6.96 -51.93 -0.36 1.85 16 32 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 33 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.08 1.80 8.00 -51.93 -0.42 1.39 16 35 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 295.16 15.07 4.45 4.45 Total: -1.00 -27.80 295.16 -9.20 -37.00 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.21 Total: 5.01 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -3.58 Total: -24.88 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.17 Total: -37.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.80 -9.20 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052047189.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.562 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds