Wall clock time and date at job start Thu Apr 9 2020 12:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38266 * 119.99633 * 2 1 4 4 C 1.38214 * 119.99638 * 180.27446 * 3 2 1 5 5 C 1.38254 * 120.00115 * 359.46916 * 4 3 2 6 6 C 1.38210 * 120.00093 * 0.25395 * 5 4 3 7 7 C 1.50696 * 120.00441 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47223 * 89.99412 * 7 6 5 9 9 C 1.36945 * 119.99705 * 90.00582 * 8 7 6 10 10 H 1.07996 * 119.99880 * 218.10962 * 9 8 7 11 11 C 1.38808 * 119.99813 * 38.10305 * 9 8 7 12 12 N 1.31621 * 120.00471 * 20.49809 * 11 9 8 13 13 Si 1.86803 * 119.99954 * 200.49591 * 11 9 8 14 14 H 1.48505 * 109.47125 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47299 * 120.00251 * 13 11 9 16 16 H 1.48500 * 109.47204 * 240.00400 * 13 11 9 17 17 C 1.46497 * 120.00516 * 270.00762 * 8 7 6 18 18 C 1.52996 * 117.49849 * 194.01405 * 17 8 7 19 19 C 1.52990 * 117.50217 * 125.35269 * 17 8 7 20 20 C 1.38204 * 120.00328 * 179.71815 * 2 1 3 21 21 H 1.09002 * 109.47236 * 270.28012 * 1 2 3 22 22 H 1.08997 * 109.47665 * 30.27802 * 1 2 3 23 23 H 1.09002 * 109.47370 * 150.28074 * 1 2 3 24 24 H 1.07996 * 119.99959 * 0.02562 * 3 2 1 25 25 H 1.08003 * 119.99990 * 179.74289 * 4 3 2 26 26 H 1.08003 * 119.99956 * 180.27732 * 5 4 3 27 27 H 1.08994 * 109.47625 * 209.99945 * 7 6 5 28 28 H 1.09007 * 109.46753 * 330.00034 * 7 6 5 29 29 H 0.96998 * 119.99919 * 174.96384 * 12 11 9 30 30 H 1.09003 * 115.54831 * 339.67477 * 17 8 7 31 31 H 1.09000 * 117.50038 * 359.97438 * 18 17 8 32 32 H 1.09008 * 117.49969 * 145.01938 * 18 17 8 33 33 H 1.09007 * 117.50278 * 214.98293 * 19 17 8 34 34 H 1.09005 * 117.50151 * 359.97438 * 19 17 8 35 35 H 1.07997 * 119.99932 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 -0.0057 5 6 4.2717 0.0002 -0.0004 6 6 3.5807 -1.1968 0.0054 7 6 4.3342 -2.5018 0.0118 8 7 4.5784 -2.9179 1.3951 9 6 3.6654 -3.7055 2.0445 10 1 3.4581 -3.5409 3.0915 11 6 3.0064 -4.7153 1.3569 12 7 3.5134 -5.1895 0.2386 13 14 1.3999 -5.4014 2.0186 14 1 1.0462 -4.7035 3.2809 15 1 0.3224 -5.1909 1.0186 16 1 1.5535 -6.8547 2.2823 17 6 5.7991 -2.4916 2.0838 18 6 6.1625 -3.2080 3.3858 19 6 5.6392 -1.7701 3.4233 20 6 2.1980 -1.1968 0.0059 21 1 -0.3634 0.0050 1.0277 22 1 -0.3634 0.8874 -0.5181 23 1 -0.3634 -0.8925 -0.5095 24 1 1.6582 2.1327 0.0004 25 1 4.1203 2.1328 -0.0099 26 1 5.3517 0.0003 -0.0003 27 1 3.7452 -3.2640 -0.4983 28 1 5.2867 -2.3739 -0.5026 29 1 3.0927 -5.9436 -0.2031 30 1 6.6181 -2.1768 1.4371 31 1 5.4931 -3.9963 3.7303 32 1 7.2207 -3.3641 3.5960 33 1 6.3532 -0.9806 3.6582 34 1 4.6257 -1.6121 3.7922 35 1 1.6581 -2.1321 0.0101 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052047189.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:54 Heat of formation + Delta-G solvation = 49.791832 kcal Electronic energy + Delta-G solvation = -16157.996814 eV Core-core repulsion = 13735.439611 eV Total energy + Delta-G solvation = -2422.557203 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.21819 -38.57050 -35.50433 -33.89519 -32.77104 -31.20657 -27.92335 -27.23776 -25.35240 -22.95610 -22.83638 -21.65718 -21.30915 -18.31104 -17.37936 -17.06846 -16.29210 -16.11519 -15.60352 -15.50088 -14.84436 -14.41089 -14.06297 -13.81132 -13.64740 -13.15470 -12.99830 -12.86147 -12.73795 -12.54825 -12.31754 -12.18939 -11.94466 -11.78000 -11.58918 -11.35978 -10.94339 -10.46896 -9.51676 -9.32665 -8.44338 -7.87253 -5.47410 0.62904 0.67928 1.37533 1.41866 1.51035 2.43295 2.97823 3.13682 3.45690 3.65661 4.05667 4.13324 4.28655 4.28970 4.41330 4.48647 4.55714 4.62093 4.68946 4.81331 4.81842 4.93755 4.98864 5.02724 5.09497 5.32604 5.36848 5.40686 5.54084 5.56903 5.68183 5.72824 5.83769 6.05969 6.32678 6.47338 7.12085 7.81402 8.33356 9.09151 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.011708 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.672643 B = 2390.881335 C = 3365.869339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.137 4.137 4 C -0.118 4.118 5 C -0.131 4.131 6 C -0.087 4.087 7 C 0.181 3.819 8 N -0.557 5.557 9 C -0.254 4.254 10 H 0.046 0.954 11 C -0.025 4.025 12 N -0.914 5.914 13 Si 0.946 3.054 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.287 1.287 17 C 0.106 3.894 18 C -0.194 4.194 19 C -0.204 4.204 20 C -0.126 4.126 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.056 0.944 24 H 0.145 0.855 25 H 0.146 0.854 26 H 0.122 0.878 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.255 0.745 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 11.457 -0.424 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.155 4.155 4 C -0.136 4.136 5 C -0.150 4.150 6 C -0.090 4.090 7 C 0.056 3.944 8 N -0.274 5.274 9 C -0.384 4.384 10 H 0.063 0.937 11 C -0.223 4.223 12 N -0.558 5.558 13 Si 0.774 3.226 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.213 1.213 17 C -0.002 4.002 18 C -0.233 4.233 19 C -0.245 4.245 20 C -0.145 4.145 21 H 0.089 0.911 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.163 0.837 25 H 0.164 0.836 26 H 0.140 0.860 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.910 11.318 -0.595 11.371 hybrid contribution -0.805 -1.065 0.416 1.398 sum -1.715 10.254 -0.178 10.398 Atomic orbital electron populations 1.20780 0.90019 1.03163 1.02533 1.20209 0.97190 0.92983 0.99867 1.21203 0.94477 0.97454 1.02392 1.21370 0.94571 0.98038 0.99643 1.21130 0.99931 0.92072 1.01839 1.20947 0.94416 0.97163 0.96463 1.19855 0.96816 0.91636 0.86116 1.43446 1.17977 1.54773 1.11176 1.18934 1.15542 1.09186 0.94736 0.93655 1.25732 1.01897 0.96656 0.97993 1.70007 1.40533 1.24734 1.20500 0.85546 0.81036 0.77853 0.78159 1.19758 1.21103 1.21332 1.21371 0.90247 1.01122 0.87502 1.23085 1.00718 0.95181 1.04308 1.23260 1.00630 0.94787 1.05800 1.20895 0.94400 0.97109 1.02135 0.91136 0.89312 0.92467 0.83686 0.83591 0.86014 0.91149 0.94199 0.93599 0.87642 0.91158 0.87758 0.87614 0.92094 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 10.01 71.23 0.71 -2.20 16 2 C -0.10 -3.47 5.88 -19.87 -0.12 -3.59 16 3 C -0.14 -3.98 9.70 22.27 0.22 -3.76 16 4 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 5 C -0.13 -4.62 9.70 22.27 0.22 -4.40 16 6 C -0.09 -3.70 5.46 -19.87 -0.11 -3.81 16 7 C 0.18 8.70 5.46 85.63 0.47 9.16 16 8 N -0.56 -27.93 2.76 -682.38 -1.89 -29.82 16 9 C -0.25 -13.93 8.04 84.03 0.68 -13.26 16 10 H 0.05 2.58 7.23 -2.91 -0.02 2.56 16 11 C -0.03 -1.39 4.97 84.86 0.42 -0.96 16 12 N -0.91 -52.88 11.45 21.65 0.25 -52.64 16 13 Si 0.95 44.87 29.60 68.60 2.03 46.90 16 14 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 17 C 0.11 4.51 6.61 44.99 0.30 4.81 16 18 C -0.19 -7.73 9.81 30.62 0.30 -7.42 16 19 C -0.20 -7.76 10.09 30.61 0.31 -7.45 16 20 C -0.13 -5.31 9.36 22.27 0.21 -5.11 16 21 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 22 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 23 H 0.06 1.58 8.09 -2.39 -0.02 1.56 16 24 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 25 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 26 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.07 3.87 5.46 -2.39 -0.01 3.86 16 28 H 0.04 1.80 7.98 -2.38 -0.02 1.78 16 29 H 0.25 14.20 8.32 -92.71 -0.77 13.43 16 30 H 0.11 4.04 8.10 -2.39 -0.02 4.02 16 31 H 0.07 3.20 6.96 -2.39 -0.02 3.18 16 32 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 33 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.06 2.60 8.00 -2.38 -0.02 2.58 16 35 H 0.09 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -61.87 295.16 5.27 -56.61 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.05 Total: 20.18 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 3.82 Total: -41.24 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -1.64 Total: -82.45 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.87 5.27 -56.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052047189.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.400 kcal (2) G-P(sol) polarization free energy of solvation -61.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds