Wall clock time and date at job start Thu Apr 9 2020 12:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86794 * 119.99777 * 2 1 4 4 H 1.48501 * 109.47193 * 270.00089 * 3 2 1 5 5 H 1.48501 * 109.47294 * 30.00328 * 3 2 1 6 6 H 1.48505 * 109.47095 * 150.00255 * 3 2 1 7 7 C 1.38638 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00230 * 359.97438 * 7 2 1 9 9 O 1.34930 * 119.99503 * 179.97438 * 7 2 1 10 10 C 1.42898 * 116.99837 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.06411 * 30.88019 * 10 9 7 12 12 C 1.52634 * 109.12208 * 149.99531 * 10 9 7 13 13 C 1.53446 * 109.36538 * 175.05784 * 12 10 9 14 14 C 1.51473 * 107.36917 * 295.97775 * 13 12 10 15 15 O 1.21260 * 121.17979 * 222.50632 * 14 13 12 16 16 C 1.47596 * 117.64325 * 42.48384 * 14 13 12 17 17 C 1.39788 * 119.72476 * 169.01024 * 16 14 13 18 18 C 1.37895 * 119.77389 * 180.10459 * 17 16 14 19 19 C 1.38425 * 119.94823 * 359.46670 * 18 17 16 20 20 C 1.38249 * 120.49300 * 0.34172 * 19 18 17 21 21 C 1.38312 * 120.35829 * 0.02562 * 20 19 18 22 22 H 0.96997 * 120.00488 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.48335 * 55.09449 * 12 10 9 24 24 H 1.08997 * 109.50472 * 295.03978 * 12 10 9 25 25 H 1.08997 * 109.87953 * 176.50988 * 13 12 10 26 26 H 1.09002 * 109.93704 * 55.47297 * 13 12 10 27 27 H 1.08002 * 120.11347 * 359.83418 * 17 16 14 28 28 H 1.07997 * 120.02484 * 179.71450 * 18 17 16 29 29 H 1.08001 * 119.75445 * 180.31466 * 19 18 17 30 30 H 1.07992 * 119.82214 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4402 0.7000 7 6 2.0090 -1.2007 -0.0005 8 1 1.4690 -2.1359 -0.0005 9 8 3.3583 -1.2006 -0.0011 10 6 4.0070 -2.4738 -0.0022 11 1 3.3806 -3.1921 -0.5312 12 6 5.3465 -2.3518 -0.7238 13 6 6.1028 -3.6830 -0.6211 14 6 6.4040 -3.9201 0.8443 15 8 7.4850 -4.3356 1.2039 16 6 5.3353 -3.6269 1.8192 17 6 5.4756 -4.0411 3.1469 18 6 4.4768 -3.7697 4.0581 19 6 3.3455 -3.0795 3.6582 20 6 3.2039 -2.6643 2.3472 21 6 4.1920 -2.9343 1.4178 22 1 -0.4851 0.8400 0.0004 23 1 5.9376 -1.5611 -0.2618 24 1 5.1741 -2.1114 -1.7728 25 1 7.0332 -3.6252 -1.1860 26 1 5.4842 -4.4928 -1.0080 27 1 6.3613 -4.5757 3.4571 28 1 4.5789 -4.0918 5.0839 29 1 2.5675 -2.8641 4.3756 30 1 2.3170 -2.1262 2.0471 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379441.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:46 Heat of formation + Delta-G solvation = -51.245875 kcal Electronic energy + Delta-G solvation = -15958.939304 eV Core-core repulsion = 13298.449021 eV Total energy + Delta-G solvation = -2660.490283 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.20534 -38.04935 -36.81393 -34.22038 -31.89071 -30.61945 -30.17291 -27.24486 -24.22902 -22.91460 -22.77682 -20.85906 -18.85935 -17.82141 -16.67488 -15.86256 -15.77177 -15.43012 -14.48709 -14.13390 -14.05518 -13.51032 -13.39831 -13.11677 -12.54766 -12.23618 -12.02314 -11.71802 -11.60681 -11.45472 -10.98319 -10.89390 -10.48113 -10.14301 -9.92680 -9.46935 -9.32232 -8.62999 -8.37289 -8.29034 -6.12576 -3.81330 0.95651 1.72208 2.63590 3.34952 3.39061 3.55533 4.06585 4.22604 4.46268 4.89213 4.92965 5.00918 5.14957 5.27320 5.31324 5.41709 5.56092 5.66247 5.77506 5.79071 5.91490 6.09366 6.22193 6.29511 6.42448 6.49128 6.66424 6.85657 6.98631 7.32341 7.67110 7.76691 8.22619 9.26448 9.78128 10.98860 Molecular weight = 232.09amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.009195 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.070641 B = 3044.257001 C = 3645.251825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.050 3.950 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.366 4.366 8 H 0.084 0.916 9 O -0.314 6.314 10 C 0.137 3.863 11 H 0.070 0.930 12 C -0.110 4.110 13 C -0.160 4.160 14 C 0.404 3.596 15 O -0.468 6.468 16 C -0.178 4.178 17 C -0.075 4.075 18 C -0.145 4.145 19 C -0.093 4.093 20 C -0.110 4.110 21 C -0.042 4.042 22 H 0.271 0.729 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 -6.543 2.850 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.149 4.149 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.443 4.443 8 H 0.101 0.899 9 O -0.229 6.229 10 C 0.078 3.922 11 H 0.088 0.912 12 C -0.147 4.147 13 C -0.197 4.197 14 C 0.284 3.716 15 O -0.345 6.345 16 C -0.179 4.179 17 C -0.093 4.093 18 C -0.163 4.163 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.043 4.043 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.841 -6.467 3.030 11.365 hybrid contribution 0.007 0.644 0.138 0.659 sum 8.849 -5.823 3.168 11.057 Atomic orbital electron populations 1.69675 1.05334 1.27459 1.52571 1.24299 0.94800 0.98232 0.97550 0.86230 0.80164 0.82349 0.78340 1.20631 1.21690 1.18753 1.20400 0.78271 0.95155 1.50511 0.89861 1.85383 1.20729 1.23667 1.93137 1.20498 0.93496 0.88696 0.89488 0.91215 1.21540 0.95103 0.95875 1.02221 1.22287 1.02824 0.99873 0.94753 1.22825 0.85677 0.71708 0.91408 1.90475 1.25142 1.35404 1.83451 1.20248 0.96871 1.05587 0.95203 1.21222 0.98359 0.97797 0.91926 1.21068 0.94720 1.01196 0.99337 1.21452 0.97200 0.96037 0.96471 1.21843 1.00697 0.97975 0.92261 1.21100 0.91883 0.93260 0.98032 0.91923 0.90804 0.89592 0.88737 0.87964 0.85691 0.86083 0.85903 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.40 13.96 55.48 0.77 -25.63 16 2 C 0.05 1.38 5.49 -17.51 -0.10 1.28 16 3 Si 0.90 22.08 28.61 -169.99 -4.86 17.22 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.37 -9.73 7.86 30.88 0.24 -9.49 16 8 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 9 O -0.31 -7.54 7.96 -16.51 -0.13 -7.67 16 10 C 0.14 2.64 2.77 -28.21 -0.08 2.56 16 11 H 0.07 1.31 7.80 -51.92 -0.40 0.91 16 12 C -0.11 -1.72 5.53 -26.69 -0.15 -1.86 16 13 C -0.16 -2.12 6.19 -27.27 -0.17 -2.29 16 14 C 0.40 6.51 6.89 -30.11 -0.21 6.31 16 15 O -0.47 -8.36 17.26 5.58 0.10 -8.27 16 16 C -0.18 -3.04 5.82 -105.00 -0.61 -3.66 16 17 C -0.07 -1.17 9.61 -39.13 -0.38 -1.55 16 18 C -0.15 -2.11 10.04 -39.64 -0.40 -2.50 16 19 C -0.09 -1.49 10.03 -39.51 -0.40 -1.89 16 20 C -0.11 -2.11 9.22 -39.55 -0.36 -2.47 16 21 C -0.04 -0.78 5.64 -104.23 -0.59 -1.37 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 24 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.13 1.79 7.71 -52.49 -0.40 1.38 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.16 3.44 5.60 -52.49 -0.29 3.15 16 LS Contribution 260.13 15.07 3.92 3.92 Total: -1.00 -30.19 260.13 -6.58 -36.77 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.19 Total: 0.59 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.19 Total: -16.94 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.77 Total: -25.63 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.04 Total: -15.93 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.22 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.19 -6.58 -36.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379441.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.472 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds