Wall clock time and date at job start Thu Apr 9 2020 12:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53933 * 113.73592 * 2 1 4 4 N 1.48185 * 86.10323 * 90.78132 * 3 2 1 5 5 C 1.46900 * 111.07392 * 137.52137 * 4 3 2 6 6 C 1.50705 * 109.47173 * 90.56686 * 5 4 3 7 7 C 1.37642 * 120.12670 * 260.00314 * 6 5 4 8 8 C 1.38614 * 120.24719 * 180.02562 * 7 6 5 9 9 C 1.38656 * 120.49983 * 359.97195 * 8 7 6 10 10 C 1.37593 * 120.25287 * 0.02676 * 9 8 7 11 11 C 1.40694 * 120.12854 * 79.72290 * 6 5 4 12 12 C 1.41399 * 120.24395 * 0.02562 * 11 6 5 13 13 H 1.08001 * 119.99943 * 333.96631 * 12 11 6 14 14 C 1.39943 * 120.00061 * 153.95812 * 12 11 6 15 15 N 1.30828 * 120.00171 * 343.66995 * 14 12 11 16 16 Si 1.86799 * 120.00095 * 163.66666 * 14 12 11 17 17 H 1.48497 * 109.47111 * 90.00062 * 16 14 12 18 18 H 1.48505 * 109.47270 * 210.00099 * 16 14 12 19 19 H 1.48500 * 109.46958 * 329.99849 * 16 14 12 20 20 C 1.47963 * 90.79980 * 24.60010 * 4 3 2 21 21 H 1.09001 * 109.46693 * 321.23443 * 1 2 3 22 22 H 1.08996 * 109.46896 * 81.23088 * 1 2 3 23 23 H 1.09005 * 109.47250 * 201.23712 * 1 2 3 24 24 H 1.09002 * 112.94081 * 228.42604 * 2 1 3 25 25 H 1.09002 * 113.75845 * 205.06171 * 3 2 1 26 26 H 1.08998 * 113.75661 * 336.42679 * 3 2 1 27 27 H 1.08999 * 109.47459 * 210.56482 * 5 4 3 28 28 H 1.08997 * 109.46834 * 330.56692 * 5 4 3 29 29 H 1.08000 * 119.87585 * 359.97438 * 7 6 5 30 30 H 1.08002 * 119.74605 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.87335 * 179.97438 * 9 8 7 32 32 H 1.07997 * 120.13461 * 179.97438 * 10 9 8 33 33 H 0.96996 * 120.00153 * 180.02562 * 15 14 12 34 34 H 1.08997 * 113.75818 * 221.08332 * 20 4 3 35 35 H 1.09002 * 113.85662 * 89.73397 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1496 1.4091 0.0000 4 7 2.1275 1.3088 1.4783 5 6 3.3738 1.8234 2.0613 6 6 3.2222 3.2942 2.3530 7 6 3.7433 4.2277 1.4862 8 6 3.6057 5.5811 1.7524 9 6 2.9427 6.0104 2.8919 10 6 2.4137 5.0949 3.7725 11 6 2.5423 3.7183 3.5095 12 6 1.9981 2.7684 4.4044 13 1 1.7188 1.7882 4.0473 14 6 1.8216 3.0984 5.7529 15 7 2.4362 4.1370 6.2581 16 14 0.7085 2.0559 6.8316 17 1 1.5031 0.9691 7.4584 18 1 0.1094 2.9057 7.8919 19 1 -0.3718 1.4642 6.0022 20 6 2.1496 -0.1685 1.3991 21 1 -0.3633 0.8013 0.6435 22 1 -0.3633 0.1567 -1.0156 23 1 -0.3634 -0.9579 0.3723 24 1 1.9549 -0.6661 -0.7509 25 1 3.1536 1.4473 -0.4226 26 1 1.4893 2.1791 -0.3990 27 1 3.5895 1.2898 2.9869 28 1 4.1926 1.6752 1.3572 29 1 4.2620 3.9046 0.5958 30 1 4.0182 6.3067 1.0669 31 1 2.8417 7.0673 3.0896 32 1 1.8980 5.4314 4.6597 33 1 2.3141 4.3655 7.1928 34 1 1.4893 -0.6566 2.1159 35 1 3.1529 -0.5944 1.3867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:59 Heat of formation + Delta-G solvation = 44.288409 kcal Electronic energy + Delta-G solvation = -16059.883212 eV Core-core repulsion = 13637.087363 eV Total energy + Delta-G solvation = -2422.795849 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.55498 -37.34297 -33.54285 -32.25065 -29.62733 -29.23202 -26.17984 -25.70797 -24.90717 -22.60296 -20.85145 -19.47778 -18.63030 -17.08213 -15.72119 -15.27014 -14.91843 -14.53793 -14.14538 -13.48710 -13.28418 -12.86421 -12.54294 -12.34269 -11.83893 -11.77305 -11.52392 -11.18457 -11.01325 -10.89386 -10.75292 -10.53196 -10.34110 -10.23682 -10.03747 -9.41602 -9.22481 -9.07796 -8.06423 -7.27868 -7.22428 -6.66029 -4.23842 2.85092 3.05228 3.12116 3.17810 3.31886 4.01016 4.49736 4.71713 4.74707 5.16713 5.51093 5.62600 5.72363 5.80242 5.86783 5.97713 6.01026 6.12760 6.19437 6.23102 6.30896 6.38663 6.51620 6.57462 6.63204 6.91807 7.00110 7.21819 7.36500 7.48085 7.68996 7.77382 8.00412 8.16860 8.22150 8.41091 8.75932 9.02855 9.10336 10.28542 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.010734 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.085660 B = 2608.012218 C = 3793.932034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.008 3.992 4 N -0.456 5.456 5 C 0.090 3.910 6 C -0.187 4.187 7 C -0.087 4.087 8 C -0.245 4.245 9 C -0.108 4.108 10 C -0.164 4.164 11 C 0.129 3.871 12 C -0.447 4.447 13 H 0.086 0.914 14 C 0.073 3.927 15 N -0.799 5.799 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.260 1.260 20 C -0.001 4.001 21 H 0.069 0.931 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.278 0.722 34 H 0.083 0.917 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 -6.333 -6.695 9.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C -0.121 4.121 4 N -0.178 5.178 5 C -0.037 4.037 6 C -0.189 4.189 7 C -0.106 4.106 8 C -0.265 4.265 9 C -0.126 4.126 10 C -0.184 4.184 11 C 0.126 3.874 12 C -0.477 4.477 13 H 0.104 0.896 14 C -0.144 4.144 15 N -0.425 5.425 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.184 1.184 20 C -0.130 4.130 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.911 -5.882 -6.065 8.662 hybrid contribution 0.424 -0.610 0.219 0.775 sum -1.487 -6.492 -5.846 8.862 Atomic orbital electron populations 1.21498 0.93403 1.02209 1.01396 1.22791 0.96842 0.97266 0.97120 1.23978 0.99658 0.96795 0.91671 1.68708 1.34799 1.06048 1.08225 1.21180 0.89090 0.95064 0.98323 1.19425 1.07407 0.92086 0.99954 1.20342 0.99885 0.93287 0.97097 1.20282 1.11179 0.94551 1.00481 1.20661 0.99475 0.97275 0.95236 1.21340 1.04076 0.93045 0.99894 1.17371 0.87634 0.92195 0.90173 1.19664 1.35472 1.00603 0.91958 0.89559 1.25953 0.94264 0.95060 0.99092 1.69838 1.33546 1.24416 1.14666 0.86396 0.81159 0.80227 0.79425 1.19722 1.20323 1.18391 1.23938 0.99639 0.92642 0.96750 0.91167 0.93089 0.92884 0.91356 0.92202 0.89973 0.90812 0.95810 0.90114 0.89896 0.89756 0.86578 0.91138 0.89896 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.64 37.16 0.36 -1.29 16 2 C -0.12 -1.66 4.59 -89.69 -0.41 -2.07 16 3 C 0.01 0.13 7.51 -2.64 -0.02 0.11 16 4 N -0.46 -8.68 5.72 -239.52 -1.37 -10.05 16 5 C 0.09 1.89 4.12 -4.97 -0.02 1.87 16 6 C -0.19 -4.55 5.50 -103.91 -0.57 -5.12 16 7 C -0.09 -2.02 9.65 -39.66 -0.38 -2.40 16 8 C -0.25 -5.74 10.05 -39.29 -0.39 -6.13 16 9 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 10 C -0.16 -4.40 8.69 -38.87 -0.34 -4.74 16 11 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16 12 C -0.45 -11.88 8.18 -37.74 -0.31 -12.19 16 13 H 0.09 2.25 6.85 -52.49 -0.36 1.89 16 14 C 0.07 1.86 5.16 -17.34 -0.09 1.77 16 15 N -0.80 -21.00 10.95 55.55 0.61 -20.39 16 16 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 C 0.00 -0.01 7.52 -2.76 -0.02 -0.03 16 21 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 26 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 27 H 0.07 1.62 7.30 -51.93 -0.38 1.24 16 28 H 0.02 0.46 7.25 -51.93 -0.38 0.08 16 29 H 0.08 1.66 8.03 -52.49 -0.42 1.24 16 30 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.08 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 33 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 34 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -27.76 287.84 -9.81 -37.57 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.17 Total: 4.81 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -3.19 Total: -30.39 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: -0.76 Total: -30.44 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.76 -9.81 -37.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.862 kcal (2) G-P(sol) polarization free energy of solvation -27.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds