Wall clock time and date at job start Thu Apr 9 2020 12:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53933 * 113.73592 * 2 1 4 4 N 1.48185 * 86.10323 * 90.78132 * 3 2 1 5 5 C 1.46900 * 111.07392 * 137.52137 * 4 3 2 6 6 C 1.50705 * 109.47173 * 90.56686 * 5 4 3 7 7 C 1.37642 * 120.12670 * 260.00314 * 6 5 4 8 8 C 1.38614 * 120.24719 * 180.02562 * 7 6 5 9 9 C 1.38656 * 120.49983 * 359.97195 * 8 7 6 10 10 C 1.37593 * 120.25287 * 0.02676 * 9 8 7 11 11 C 1.40694 * 120.12854 * 79.72290 * 6 5 4 12 12 C 1.41399 * 120.24395 * 0.02562 * 11 6 5 13 13 H 1.08001 * 119.99943 * 333.96631 * 12 11 6 14 14 C 1.39943 * 120.00061 * 153.95812 * 12 11 6 15 15 N 1.30828 * 120.00171 * 343.66995 * 14 12 11 16 16 Si 1.86799 * 120.00095 * 163.66666 * 14 12 11 17 17 H 1.48497 * 109.47111 * 90.00062 * 16 14 12 18 18 H 1.48505 * 109.47270 * 210.00099 * 16 14 12 19 19 H 1.48500 * 109.46958 * 329.99849 * 16 14 12 20 20 C 1.47963 * 90.79980 * 24.60010 * 4 3 2 21 21 H 1.09001 * 109.46693 * 321.23443 * 1 2 3 22 22 H 1.08996 * 109.46896 * 81.23088 * 1 2 3 23 23 H 1.09005 * 109.47250 * 201.23712 * 1 2 3 24 24 H 1.09002 * 112.94081 * 228.42604 * 2 1 3 25 25 H 1.09002 * 113.75845 * 205.06171 * 3 2 1 26 26 H 1.08998 * 113.75661 * 336.42679 * 3 2 1 27 27 H 1.08999 * 109.47459 * 210.56482 * 5 4 3 28 28 H 1.08997 * 109.46834 * 330.56692 * 5 4 3 29 29 H 1.08000 * 119.87585 * 359.97438 * 7 6 5 30 30 H 1.08002 * 119.74605 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.87335 * 179.97438 * 9 8 7 32 32 H 1.07997 * 120.13461 * 179.97438 * 10 9 8 33 33 H 0.96996 * 120.00153 * 180.02562 * 15 14 12 34 34 H 1.08997 * 113.75818 * 221.08332 * 20 4 3 35 35 H 1.09002 * 113.85662 * 89.73397 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1496 1.4091 0.0000 4 7 2.1275 1.3088 1.4783 5 6 3.3738 1.8234 2.0613 6 6 3.2222 3.2942 2.3530 7 6 3.7433 4.2277 1.4862 8 6 3.6057 5.5811 1.7524 9 6 2.9427 6.0104 2.8919 10 6 2.4137 5.0949 3.7725 11 6 2.5423 3.7183 3.5095 12 6 1.9981 2.7684 4.4044 13 1 1.7188 1.7882 4.0473 14 6 1.8216 3.0984 5.7529 15 7 2.4362 4.1370 6.2581 16 14 0.7085 2.0559 6.8316 17 1 1.5031 0.9691 7.4584 18 1 0.1094 2.9057 7.8919 19 1 -0.3718 1.4642 6.0022 20 6 2.1496 -0.1685 1.3991 21 1 -0.3633 0.8013 0.6435 22 1 -0.3633 0.1567 -1.0156 23 1 -0.3634 -0.9579 0.3723 24 1 1.9549 -0.6661 -0.7509 25 1 3.1536 1.4473 -0.4226 26 1 1.4893 2.1791 -0.3990 27 1 3.5895 1.2898 2.9869 28 1 4.1926 1.6752 1.3572 29 1 4.2620 3.9046 0.5958 30 1 4.0182 6.3067 1.0669 31 1 2.8417 7.0673 3.0896 32 1 1.8980 5.4314 4.6597 33 1 2.3141 4.3655 7.1928 34 1 1.4893 -0.6566 2.1159 35 1 3.1529 -0.5944 1.3867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:00:59 Heat of formation + Delta-G solvation = 28.712644 kcal Electronic energy + Delta-G solvation = -16060.558628 eV Core-core repulsion = 13637.087363 eV Total energy + Delta-G solvation = -2423.471265 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90367 -39.16546 -35.46256 -33.79950 -31.40202 -30.88791 -27.75784 -27.02305 -26.63084 -24.07551 -22.77394 -21.28311 -19.80537 -19.01102 -17.30047 -16.89261 -16.41202 -16.14679 -15.78648 -15.18800 -14.87756 -14.36579 -14.08654 -13.64375 -13.49369 -13.28266 -13.13880 -12.85559 -12.71994 -12.52242 -12.29538 -12.10998 -11.96527 -11.47771 -11.39247 -11.24807 -11.03181 -10.96697 -9.44459 -9.21145 -9.13554 -8.56303 -6.23019 1.01917 1.15141 1.37720 1.49226 1.56061 2.23296 2.80099 3.20928 3.56648 3.84409 4.01677 4.26242 4.36937 4.40375 4.53026 4.57938 4.61324 4.71710 4.75462 4.84156 4.89462 5.07699 5.08235 5.17549 5.21723 5.25648 5.40245 5.54505 5.56449 5.67261 5.81383 6.10599 6.20365 6.25543 6.36061 6.49322 6.79913 7.07001 7.15403 8.40403 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.010734 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.085660 B = 2608.012218 C = 3793.932034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.005 3.995 4 N -0.489 5.489 5 C 0.100 3.900 6 C -0.193 4.193 7 C -0.094 4.094 8 C -0.245 4.245 9 C -0.117 4.117 10 C -0.196 4.196 11 C 0.097 3.903 12 C -0.473 4.473 13 H 0.082 0.918 14 C 0.031 3.969 15 N -0.832 5.832 16 Si 0.973 3.027 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.261 1.261 20 C -0.002 4.002 21 H 0.040 0.960 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.284 0.716 34 H 0.079 0.921 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 -7.633 -8.168 11.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 C -0.123 4.123 4 N -0.211 5.211 5 C -0.028 4.028 6 C -0.195 4.195 7 C -0.112 4.112 8 C -0.264 4.264 9 C -0.135 4.135 10 C -0.216 4.216 11 C 0.095 3.905 12 C -0.503 4.503 13 H 0.100 0.900 14 C -0.182 4.182 15 N -0.459 5.459 16 Si 0.795 3.205 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.185 1.185 20 C -0.131 4.131 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.835 -7.180 -7.551 10.580 hybrid contribution 0.456 -0.156 0.573 0.748 sum -1.379 -7.336 -6.978 10.218 Atomic orbital electron populations 1.21491 0.93021 1.01864 1.01981 1.22726 0.97041 0.95951 0.96462 1.24047 1.00415 0.98174 0.89704 1.68631 1.33770 1.08522 1.10219 1.21030 0.90801 0.92800 0.98129 1.19883 1.06065 0.94437 0.99112 1.20711 0.99540 0.93156 0.97842 1.20685 1.09994 0.95511 1.00195 1.20931 0.99206 0.98042 0.95327 1.21335 1.05930 0.93921 1.00388 1.17745 0.88746 0.92446 0.91611 1.19793 1.36971 1.00611 0.92894 0.90014 1.26748 0.95150 0.96279 1.00067 1.69903 1.34691 1.25960 1.15315 0.85337 0.78996 0.78662 0.77521 1.18730 1.19448 1.18519 1.24028 1.00635 0.90356 0.98033 0.94113 0.91205 0.91461 0.88273 0.90979 0.91016 0.92793 0.93967 0.87081 0.86840 0.87804 0.88569 0.90580 0.90305 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.64 71.98 0.69 -2.29 16 2 C -0.10 -2.52 4.59 -10.15 -0.05 -2.57 16 3 C 0.01 0.16 7.51 86.37 0.65 0.81 16 4 N -0.49 -18.24 5.72 -911.71 -5.21 -23.45 16 5 C 0.10 4.13 4.12 85.56 0.35 4.49 16 6 C -0.19 -9.42 5.50 -19.40 -0.11 -9.52 16 7 C -0.09 -4.21 9.65 22.22 0.21 -3.99 16 8 C -0.24 -11.05 10.05 22.46 0.23 -10.83 16 9 C -0.12 -5.72 10.02 22.22 0.22 -5.50 16 10 C -0.20 -10.86 8.69 22.73 0.20 -10.67 16 11 C 0.10 5.37 5.56 -21.29 -0.12 5.25 16 12 C -0.47 -25.94 8.18 23.46 0.19 -25.75 16 13 H 0.08 4.41 6.85 -2.91 -0.02 4.39 16 14 C 0.03 1.62 5.16 85.26 0.44 2.06 16 15 N -0.83 -45.13 10.95 21.83 0.24 -44.90 16 16 Si 0.97 39.96 29.59 68.60 2.03 41.99 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 18 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 C 0.00 -0.05 7.52 86.41 0.65 0.60 16 21 H 0.04 1.20 8.00 -2.39 -0.02 1.18 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.07 1.99 7.49 -2.39 -0.02 1.97 16 26 H 0.07 2.28 8.10 -2.39 -0.02 2.27 16 27 H 0.05 2.40 7.30 -2.39 -0.02 2.38 16 28 H 0.04 1.55 7.25 -2.39 -0.02 1.53 16 29 H 0.11 4.25 8.03 -2.91 -0.02 4.22 16 30 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.10 5.59 6.20 -2.91 -0.02 5.57 16 33 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 34 H 0.08 2.34 8.10 -2.39 -0.02 2.32 16 35 H 0.07 1.94 7.93 -2.39 -0.02 1.92 16 Total: -1.00 -60.91 287.84 1.68 -59.23 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 1.06 Total: 25.03 kcal Atomic # 6 Polarization: -61.47 SS G_CDS: 3.57 Total: -57.91 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -4.97 Total: -68.35 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -60.91 1.68 -59.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.946 kcal (2) G-P(sol) polarization free energy of solvation -60.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds