Wall clock time and date at job start Thu Apr 9 2020 12:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47128 * 269.99475 * 3 2 1 5 5 H 1.48497 * 109.47461 * 29.99804 * 3 2 1 6 6 H 1.48507 * 109.46937 * 149.99809 * 3 2 1 7 7 C 1.37875 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00314 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99614 * 0.02562 * 7 2 1 10 10 O 1.42093 * 106.40602 * 66.45274 * 9 7 2 11 11 O 1.42106 * 106.39890 * 293.53218 * 9 7 2 12 12 N 1.65601 * 107.21769 * 179.97438 * 9 7 2 13 13 C 1.46496 * 120.00102 * 64.99381 * 12 9 7 14 14 H 1.09003 * 115.59130 * 0.82493 * 13 12 9 15 15 C 1.53203 * 117.52164 * 146.64082 * 13 12 9 16 16 C 1.52109 * 59.76372 * 107.42439 * 15 13 12 17 17 C 1.52652 * 129.73527 * 118.97994 * 16 15 13 18 18 N 1.47656 * 87.65126 * 113.71963 * 17 16 15 19 19 C 1.47659 * 88.13650 * 26.18688 * 18 17 16 20 20 H 0.97004 * 119.99672 * 0.02562 * 1 2 3 21 21 H 0.97004 * 119.99816 * 244.99380 * 12 9 7 22 22 H 1.08999 * 117.52608 * 0.02562 * 15 13 12 23 23 H 1.09006 * 117.56871 * 214.82127 * 15 13 12 24 24 H 1.09005 * 113.52066 * 359.02543 * 17 16 15 25 25 H 1.08999 * 113.52363 * 228.41441 * 17 16 15 26 26 H 1.00901 * 111.00076 * 137.99713 * 18 17 16 27 27 H 1.08996 * 113.52414 * 88.51123 * 19 18 17 28 28 H 1.09005 * 113.52053 * 219.12097 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1235 -2.7199 0.0005 10 8 0.4518 -2.7955 -1.2493 11 8 0.4511 -2.7950 1.2502 12 7 2.2483 -3.9354 0.0005 13 6 3.1394 -4.1087 1.1503 14 1 2.9907 -3.4073 1.9712 15 6 3.5646 -5.5366 1.5075 16 6 4.5602 -4.5767 0.8742 17 6 5.8849 -4.0466 1.4167 18 7 6.5573 -4.7950 0.3360 19 6 5.3122 -4.6840 -0.4499 20 1 -0.4850 0.8401 -0.0004 21 1 2.3171 -4.5325 -0.7608 22 1 3.1815 -6.3465 0.8867 23 1 3.6960 -5.7747 2.5631 24 1 6.1246 -4.4139 2.4146 25 1 5.9900 -2.9653 1.3276 26 1 7.2963 -4.2468 -0.0780 27 1 5.2590 -3.7790 -1.0551 28 1 5.0724 -5.5850 -1.0147 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238878562.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:06 Heat of formation + Delta-G solvation = -29.708122 kcal Electronic energy + Delta-G solvation = -14647.671567 eV Core-core repulsion = 12020.018839 eV Total energy + Delta-G solvation = -2627.652728 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86171 -35.55798 -35.13798 -33.98636 -33.12261 -30.91091 -26.16181 -25.82615 -24.73671 -21.72608 -19.09393 -18.38870 -17.56391 -16.79108 -16.15367 -15.13830 -15.03359 -14.85939 -14.03020 -13.74344 -13.26754 -12.97785 -12.34766 -12.08261 -11.82076 -11.39547 -11.24604 -11.15520 -10.75805 -10.63111 -10.36025 -10.32118 -10.22509 -9.96150 -9.27836 -9.10503 -8.81763 -8.23255 -6.73074 -5.35315 2.26616 3.03920 3.10993 3.16402 3.86030 4.01407 4.32484 4.45015 4.61422 4.76333 4.88097 5.06473 5.38657 5.58338 5.66379 5.74251 5.79544 5.86906 5.96978 6.03850 6.06381 6.11412 6.51900 6.85729 7.23576 7.29268 7.82502 7.94393 8.85895 10.21115 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.009725 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.264471 B = 2878.364910 C = 3493.188801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.005 7.005 11 O -1.004 7.004 12 N -1.104 6.104 13 C 0.133 3.867 14 H 0.139 0.861 15 C -0.152 4.152 16 C -0.190 4.190 17 C 0.044 3.956 18 N -0.628 5.628 19 C 0.045 3.955 20 H 0.291 0.709 21 H 0.402 0.598 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.317 0.683 27 H 0.074 0.926 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -5.387 1.429 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.995 6.995 11 O -0.993 6.993 12 N -0.853 5.853 13 C 0.022 3.978 14 H 0.157 0.843 15 C -0.192 4.192 16 C -0.193 4.193 17 C -0.087 4.087 18 N -0.252 5.252 19 C -0.085 4.085 20 H 0.102 0.898 21 H 0.233 0.767 22 H 0.116 0.884 23 H 0.120 0.880 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.978 -6.150 1.833 11.036 hybrid contribution 1.032 1.894 -0.712 2.271 sum 10.010 -4.255 1.121 10.935 Atomic orbital electron populations 1.69896 1.06776 1.30764 1.39982 1.24745 0.94457 1.00806 0.88527 0.86167 0.80129 0.80121 0.79149 1.19233 1.19941 1.18726 1.30541 1.06030 1.11740 1.66948 0.87982 1.00463 0.71997 0.73179 0.72872 1.93380 1.72947 1.87578 1.45638 1.93371 1.72693 1.87413 1.45867 1.55665 1.53943 1.50516 1.25145 1.21069 0.88313 0.97457 0.90912 0.84310 1.23202 1.00412 0.94374 1.01189 1.22612 0.91568 1.06714 0.98437 1.23051 0.90991 0.97263 0.97374 1.67326 1.05111 1.45048 1.07729 1.22973 0.89276 1.01663 0.94634 0.89847 0.76707 0.88388 0.87965 0.89797 0.90949 0.87155 0.90819 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.53 13.19 55.43 0.73 -23.80 15 2 C 0.13 3.64 5.46 -17.82 -0.10 3.54 15 3 Si 0.92 20.20 29.54 -169.99 -5.02 15.18 15 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 7 C -1.02 -27.30 9.72 30.60 0.30 -27.00 15 8 H 0.10 2.49 7.81 -52.49 -0.41 2.08 15 9 S 2.72 70.37 5.00 -107.50 -0.54 69.83 15 10 O -1.01 -29.03 18.02 -57.17 -1.03 -30.06 15 11 O -1.00 -28.81 17.77 -57.17 -1.02 -29.82 15 12 N -1.10 -21.35 6.04 -5.19 -0.03 -21.38 15 13 C 0.13 2.25 6.47 -68.28 -0.44 1.80 15 14 H 0.14 2.42 8.10 -51.93 -0.42 2.00 15 15 C -0.15 -2.09 10.46 -27.08 -0.28 -2.38 15 16 C -0.19 -2.69 3.31 -155.77 -0.52 -3.20 15 17 C 0.04 0.54 8.64 -6.79 -0.06 0.48 15 18 N -0.63 -7.73 8.71 -122.06 -1.06 -8.79 15 19 C 0.04 0.59 8.64 -6.78 -0.06 0.53 15 20 H 0.29 7.59 8.31 -40.82 -0.34 7.25 15 21 H 0.40 6.80 8.96 -34.47 -0.31 6.49 15 22 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.10 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.32 3.29 8.91 -39.29 -0.35 2.94 15 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 LS Contribution 263.22 15.07 3.97 3.97 Total: -1.00 -34.07 263.22 -8.32 -42.39 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.16 Total: 8.72 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -1.16 Total: -26.22 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.36 Total: -53.97 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -2.05 Total: -59.88 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 70.37 SS G_CDS: -0.54 Total: 69.83 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.07 -8.32 -42.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238878562.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.678 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds