Wall clock time and date at job start Thu Apr 9 2020 12:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.48145 * 127.83893 * 90.02439 * 12 9 7 14 14 C 1.54385 * 104.62074 * 219.58697 * 13 12 9 15 15 H 1.08999 * 117.61829 * 197.05161 * 14 13 12 16 16 C 1.52999 * 118.11970 * 39.45693 * 14 13 12 17 17 C 1.52998 * 60.55878 * 268.45750 * 16 14 13 18 18 N 1.46900 * 119.54533 * 248.23318 * 17 16 14 19 19 C 1.48150 * 127.83773 * 269.70686 * 12 9 7 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09001 * 110.40590 * 338.37673 * 13 12 9 22 22 H 1.09007 * 110.40209 * 100.68619 * 13 12 9 23 23 H 1.08998 * 117.44417 * 16.10825 * 16 14 13 24 24 H 1.09003 * 117.44173 * 160.81193 * 16 14 13 25 25 H 1.00895 * 111.00085 * 250.71243 * 18 17 16 26 26 H 1.00906 * 110.99902 * 14.65677 * 18 17 16 27 27 H 1.08998 * 110.41312 * 259.19964 * 19 12 9 28 28 H 1.09004 * 110.40562 * 21.63429 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 2.8655 -4.5973 1.1846 14 6 4.3442 -4.7951 0.7873 15 1 4.9315 -5.5087 1.3650 16 6 5.0385 -3.6741 0.0113 17 6 4.3446 -4.8015 -0.7556 18 7 5.1516 -5.7572 -1.5259 19 6 2.8613 -4.6115 -1.1553 20 1 -0.4850 0.8400 0.0004 21 1 2.7905 -3.9586 2.0647 22 1 2.3886 -5.5594 1.3724 23 1 4.5598 -2.6949 0.0071 24 1 6.1285 -3.6634 0.0116 25 1 5.0295 -5.6168 -2.5175 26 1 6.1257 -5.6971 -1.2695 27 1 2.3852 -5.5766 -1.3286 28 1 2.7832 -3.9834 -2.0427 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239109242.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:08 Heat of formation + Delta-G solvation = -51.361753 kcal Electronic energy + Delta-G solvation = -15017.575795 eV Core-core repulsion = 12388.984095 eV Total energy + Delta-G solvation = -2628.591700 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.46470 -35.26011 -33.99285 -33.54553 -33.04001 -30.74116 -27.36851 -26.18357 -24.83531 -20.33561 -19.28842 -18.76975 -17.50911 -16.28386 -15.97019 -15.11527 -15.04991 -14.36495 -14.04524 -13.42298 -13.20065 -13.09311 -12.26367 -12.05601 -11.65073 -11.25610 -11.24742 -11.21947 -10.88339 -10.64554 -10.42724 -10.32979 -10.22751 -9.64555 -9.25924 -9.00107 -8.36880 -8.19945 -6.71599 -5.34218 2.16515 3.06740 3.11181 3.16413 3.83844 4.02990 4.32968 4.54325 4.61875 4.87875 4.91633 5.21974 5.57180 5.78489 5.87269 5.92782 6.00575 6.01809 6.15959 6.24563 6.26118 6.44411 6.87831 7.11931 7.32165 7.38766 7.40516 7.95842 8.86746 10.22183 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.032326 B = 0.010503 C = 0.009156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.961638 B = 2665.157054 C = 3057.373241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.732 3.268 10 O -0.998 6.998 11 O -0.999 6.999 12 N -1.024 6.024 13 C 0.154 3.846 14 C -0.170 4.170 15 H 0.116 0.884 16 C -0.176 4.176 17 C 0.022 3.978 18 N -0.800 5.800 19 C 0.170 3.830 20 H 0.292 0.708 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.347 0.653 26 H 0.343 0.657 27 H 0.075 0.925 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.136 -6.350 -0.927 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.833 3.167 10 O -0.989 6.989 11 O -0.990 6.990 12 N -0.858 5.858 13 C 0.028 3.972 14 C -0.191 4.191 15 H 0.134 0.866 16 C -0.216 4.216 17 C -0.073 4.073 18 N -0.327 5.327 19 C 0.043 3.957 20 H 0.102 0.898 21 H 0.100 0.900 22 H 0.088 0.912 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.160 0.840 26 H 0.155 0.845 27 H 0.093 0.907 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.448 -6.936 -0.602 10.947 hybrid contribution 1.646 2.017 -0.287 2.619 sum 10.094 -4.919 -0.889 11.264 Atomic orbital electron populations 1.69882 1.06775 1.30903 1.40015 1.24748 0.94470 1.00764 0.88505 0.86199 0.79894 0.79699 0.79753 1.18889 1.20069 1.18845 1.30598 1.06029 1.11735 1.66902 0.88009 1.00103 0.71463 0.72353 0.72766 1.93363 1.72286 1.87440 1.45812 1.93363 1.72338 1.87442 1.45859 1.59847 1.61239 1.53153 1.11585 1.21319 0.89002 0.97624 0.89299 1.23768 0.97782 1.02516 0.94992 0.86560 1.23545 0.98542 0.96259 1.03283 1.22824 0.95013 0.95815 0.93633 1.58355 1.12366 1.52303 1.09702 1.21126 0.87489 0.97712 0.89405 0.89768 0.89951 0.91210 0.87655 0.88792 0.83969 0.84471 0.90710 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.90 13.19 55.43 0.73 -24.17 15 2 C 0.13 3.71 5.46 -17.82 -0.10 3.61 15 3 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 7 C -1.02 -27.97 9.75 30.60 0.30 -27.67 15 8 H 0.10 2.55 6.70 -52.49 -0.35 2.19 15 9 S 2.73 73.41 5.31 -107.50 -0.57 72.84 15 10 O -1.00 -29.49 17.72 -57.17 -1.01 -30.50 15 11 O -1.00 -29.43 17.72 -57.17 -1.01 -30.45 15 12 N -1.02 -21.25 3.30 -110.05 -0.36 -21.61 15 13 C 0.15 2.68 6.97 -2.41 -0.02 2.66 15 14 C -0.17 -2.48 7.18 -89.22 -0.64 -3.12 15 15 H 0.12 1.44 8.14 -51.93 -0.42 1.02 15 16 C -0.18 -2.59 9.68 -26.73 -0.26 -2.85 15 17 C 0.02 0.33 3.78 -129.98 -0.49 -0.17 15 18 N -0.80 -9.15 9.93 2.04 0.02 -9.13 15 19 C 0.17 2.98 6.96 -2.19 -0.02 2.96 15 20 H 0.29 7.73 8.31 -40.82 -0.34 7.39 15 21 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 22 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.11 1.82 6.89 -51.93 -0.36 1.46 15 24 H 0.09 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.35 3.46 9.08 -39.29 -0.36 3.10 15 26 H 0.34 3.25 8.92 -39.29 -0.35 2.90 15 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 256.56 15.07 3.87 3.87 Total: -1.00 -34.33 256.56 -7.67 -42.00 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.09 Total: 6.23 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -1.22 Total: -24.57 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.39 Total: -54.91 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -2.03 Total: -60.95 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 73.41 SS G_CDS: -0.57 Total: 72.84 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.33 -7.67 -42.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239109242.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.363 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds