Wall clock time and date at job start Thu Apr 9 2020 12:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.48145 * 127.83893 * 90.02439 * 12 9 7 14 14 C 1.54385 * 104.62074 * 219.58697 * 13 12 9 15 15 H 1.08999 * 117.61829 * 197.05161 * 14 13 12 16 16 C 1.52999 * 118.11970 * 39.45693 * 14 13 12 17 17 C 1.52998 * 60.55878 * 268.45750 * 16 14 13 18 18 N 1.46900 * 119.54533 * 248.23318 * 17 16 14 19 19 C 1.48150 * 127.83773 * 269.70686 * 12 9 7 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09001 * 110.40590 * 338.37673 * 13 12 9 22 22 H 1.09007 * 110.40209 * 100.68619 * 13 12 9 23 23 H 1.08998 * 117.44417 * 16.10825 * 16 14 13 24 24 H 1.09003 * 117.44173 * 160.81193 * 16 14 13 25 25 H 1.00895 * 111.00085 * 250.71243 * 18 17 16 26 26 H 1.00906 * 110.99902 * 14.65677 * 18 17 16 27 27 H 1.08998 * 110.41312 * 259.19964 * 19 12 9 28 28 H 1.09004 * 110.40562 * 21.63429 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 2.8655 -4.5973 1.1846 14 6 4.3442 -4.7951 0.7873 15 1 4.9315 -5.5087 1.3650 16 6 5.0385 -3.6741 0.0113 17 6 4.3446 -4.8015 -0.7556 18 7 5.1516 -5.7572 -1.5259 19 6 2.8613 -4.6115 -1.1553 20 1 -0.4850 0.8400 0.0004 21 1 2.7905 -3.9586 2.0647 22 1 2.3886 -5.5594 1.3724 23 1 4.5598 -2.6949 0.0071 24 1 6.1285 -3.6634 0.0116 25 1 5.0295 -5.6168 -2.5175 26 1 6.1257 -5.6971 -1.2695 27 1 2.3852 -5.5766 -1.3286 28 1 2.7832 -3.9834 -2.0427 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239109242.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:08 Heat of formation + Delta-G solvation = -80.807720 kcal Electronic energy + Delta-G solvation = -15018.852668 eV Core-core repulsion = 12388.984095 eV Total energy + Delta-G solvation = -2629.868573 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73825 -37.48832 -36.22143 -35.28719 -34.72948 -31.88534 -28.68834 -28.31789 -26.30411 -21.63549 -20.78565 -20.47974 -19.30276 -18.33731 -17.18972 -17.07812 -16.38627 -16.08127 -15.83518 -14.86535 -14.76372 -14.57502 -14.03502 -13.53706 -13.32559 -13.02915 -13.01133 -12.72939 -12.58547 -12.43650 -12.34819 -12.17828 -12.01843 -11.26555 -11.05137 -10.83004 -10.00579 -9.24561 -8.77797 -7.52423 0.16852 1.31494 1.33951 1.47159 2.17778 2.54417 2.68198 2.79561 3.33350 3.50378 3.66041 3.73484 4.06000 4.25264 4.43335 4.48246 4.71726 4.74569 4.86058 4.88691 4.95498 5.06217 5.32643 5.37798 5.65311 5.89195 6.19372 6.60454 6.74472 8.17878 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.032326 B = 0.010503 C = 0.009156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.961638 B = 2665.157054 C = 3057.373241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.250 1.250 7 C -1.037 5.037 8 H 0.119 0.881 9 S 2.738 3.262 10 O -1.037 7.037 11 O -1.038 7.038 12 N -1.029 6.029 13 C 0.141 3.859 14 C -0.161 4.161 15 H 0.149 0.851 16 C -0.180 4.180 17 C 0.032 3.968 18 N -0.791 5.791 19 C 0.159 3.841 20 H 0.300 0.700 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.128 0.872 25 H 0.356 0.644 26 H 0.359 0.641 27 H 0.087 0.913 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.897 -6.498 -0.985 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.174 1.174 7 C -1.171 5.171 8 H 0.137 0.863 9 S 2.841 3.159 10 O -1.028 7.028 11 O -1.028 7.028 12 N -0.866 5.866 13 C 0.015 3.985 14 C -0.182 4.182 15 H 0.167 0.833 16 C -0.220 4.220 17 C -0.064 4.064 18 N -0.322 5.322 19 C 0.032 3.968 20 H 0.110 0.890 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.173 0.827 27 H 0.105 0.895 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.213 -7.114 -0.667 13.296 hybrid contribution 0.794 1.947 -0.283 2.122 sum 12.007 -5.166 -0.950 13.106 Atomic orbital electron populations 1.69980 1.08802 1.32522 1.41317 1.26043 0.95390 1.05367 0.87483 0.85151 0.78796 0.74405 0.80757 1.17337 1.18665 1.17363 1.30925 1.07062 1.12319 1.66787 0.86269 0.99436 0.71967 0.73088 0.71374 1.93300 1.74156 1.88267 1.47056 1.93300 1.74203 1.88251 1.47069 1.59196 1.60833 1.52351 1.14255 1.21657 0.91294 0.97741 0.87763 1.23785 0.95987 1.03137 0.95246 0.83337 1.23637 1.00268 0.94689 1.03379 1.22519 0.93567 0.96444 0.93821 1.58317 1.13106 1.50629 1.10121 1.21376 0.89910 0.97581 0.87924 0.88984 0.91076 0.89464 0.90768 0.85434 0.82888 0.82654 0.89497 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.87 13.19 21.45 0.28 -53.59 15 2 C 0.07 3.92 5.46 84.65 0.46 4.38 15 3 Si 0.99 41.28 29.54 68.60 2.03 43.31 15 4 H -0.25 -9.73 7.11 99.48 0.71 -9.03 15 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 6 H -0.25 -9.77 7.11 99.48 0.71 -9.06 15 7 C -1.04 -57.68 9.75 67.73 0.66 -57.02 15 8 H 0.12 5.97 6.70 -2.91 -0.02 5.95 15 9 S 2.74 151.77 5.31 -56.49 -0.30 151.47 15 10 O -1.04 -63.63 17.72 -128.00 -2.27 -65.90 15 11 O -1.04 -63.48 17.72 -128.00 -2.27 -65.75 15 12 N -1.03 -42.95 3.30 -502.08 -1.66 -44.60 15 13 C 0.14 4.77 6.97 86.53 0.60 5.38 15 14 C -0.16 -4.25 7.18 -9.89 -0.07 -4.32 15 15 H 0.15 3.02 8.14 -2.39 -0.02 3.00 15 16 C -0.18 -4.80 9.68 30.59 0.30 -4.50 15 17 C 0.03 0.85 3.78 4.58 0.02 0.87 15 18 N -0.79 -15.26 9.93 -147.45 -1.46 -16.73 15 19 C 0.16 5.43 6.96 86.68 0.60 6.03 15 20 H 0.30 16.20 8.31 -92.71 -0.77 15.43 15 21 H 0.07 2.53 8.14 -2.39 -0.02 2.52 15 22 H 0.09 2.62 8.14 -2.38 -0.02 2.60 15 23 H 0.07 2.48 6.89 -2.39 -0.02 2.46 15 24 H 0.13 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.36 5.97 9.08 -89.70 -0.81 5.15 15 26 H 0.36 5.22 8.92 -89.69 -0.80 4.42 15 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 Total: -1.00 -75.87 256.56 -3.49 -79.36 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.42 Total: 21.60 kcal Atomic # 6 Polarization: -51.74 SS G_CDS: 2.57 Total: -49.17 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -2.84 Total: -114.92 kcal Atomic # 8 Polarization: -127.11 SS G_CDS: -4.54 Total: -131.64 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 151.77 SS G_CDS: -0.30 Total: 151.47 kcal Total: -75.87 -3.49 -79.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239109242.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.449 kcal (2) G-P(sol) polarization free energy of solvation -75.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds