Wall clock time and date at job start Thu Apr 9 2020 12:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.46987 * 59.99968 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40031 * 293.26670 * 9 7 2 11 11 O 1.42101 * 106.40156 * 66.18411 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.72553 * 9 7 2 13 13 C 1.48145 * 127.83717 * 90.02339 * 12 9 7 14 14 C 1.54384 * 104.61926 * 219.58643 * 13 12 9 15 15 H 1.09004 * 117.61982 * 115.21528 * 14 13 12 16 16 C 1.52999 * 118.12250 * 270.79297 * 14 13 12 17 17 C 1.54289 * 104.96000 * 336.13261 * 14 13 12 18 18 N 1.46903 * 121.81433 * 136.92146 * 17 14 13 19 19 C 1.48144 * 127.83847 * 269.70738 * 12 9 7 20 20 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 21 21 H 1.09003 * 110.40877 * 338.37278 * 13 12 9 22 22 H 1.09001 * 110.40737 * 100.68561 * 13 12 9 23 23 H 1.09002 * 117.44287 * 199.19133 * 16 14 13 24 24 H 1.08994 * 117.44254 * 343.89223 * 16 14 13 25 25 H 1.00901 * 110.99444 * 180.02562 * 18 17 14 26 26 H 1.00902 * 110.99940 * 303.95662 * 18 17 14 27 27 H 1.09004 * 110.40299 * 259.19940 * 19 12 9 28 28 H 1.08997 * 110.40454 * 21.62618 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2520 11 8 0.4457 -2.7920 -1.2474 12 7 2.2482 -3.9354 -0.0088 13 6 2.8704 -4.6058 1.1566 14 6 4.3473 -4.8008 0.7513 15 1 5.1036 -4.2644 1.3243 16 6 4.7295 -6.0869 0.0159 17 6 4.3408 -4.7964 -0.7916 18 7 5.3535 -4.0689 -1.5682 19 6 2.8557 -4.6034 -1.1833 20 1 -0.4849 0.8401 0.0004 21 1 2.7994 -3.9732 2.0415 22 1 2.3943 -5.5691 1.3398 23 1 5.7816 -6.3717 0.0157 24 1 4.0197 -6.9134 0.0474 25 1 5.1950 -4.1757 -2.5589 26 1 5.3765 -3.0940 -1.3090 27 1 2.3787 -5.5672 -1.3612 28 1 2.7737 -3.9691 -2.0658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239109244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:09 Heat of formation + Delta-G solvation = -81.569266 kcal Electronic energy + Delta-G solvation = -14965.613275 eV Core-core repulsion = 12335.711679 eV Total energy + Delta-G solvation = -2629.901596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46729 -37.49879 -36.23130 -35.28088 -34.50522 -32.30369 -28.61356 -28.31533 -25.77917 -22.00712 -20.76748 -20.48646 -19.27666 -18.37218 -17.21200 -16.44019 -16.31619 -16.17502 -16.09554 -15.51609 -14.88053 -14.06341 -13.86175 -13.47861 -13.43012 -13.16936 -13.07031 -12.93415 -12.60704 -12.51967 -12.32576 -12.05648 -11.31571 -11.26285 -11.09047 -10.68983 -10.08269 -9.57069 -8.79889 -7.54760 0.17190 1.29556 1.30394 1.48441 2.16219 2.47661 2.55121 2.83443 3.32624 3.54195 3.75184 3.82014 3.98296 4.16439 4.37103 4.52772 4.63447 4.75465 4.84762 4.93111 5.07778 5.10119 5.25345 5.41276 5.62931 5.85688 6.21161 6.50247 6.72230 8.15734 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.032165 B = 0.010379 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.297603 B = 2697.212039 C = 3102.406321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.993 3.007 4 H -0.247 1.247 5 H -0.258 1.258 6 H -0.258 1.258 7 C -1.037 5.037 8 H 0.117 0.883 9 S 2.735 3.265 10 O -1.039 7.039 11 O -1.040 7.040 12 N -1.028 6.028 13 C 0.140 3.860 14 C -0.166 4.166 15 H 0.125 0.875 16 C -0.084 4.084 17 C -0.001 4.001 18 N -0.797 5.797 19 C 0.130 3.870 20 H 0.300 0.700 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.355 0.645 26 H 0.344 0.656 27 H 0.085 0.915 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.346 -7.592 -0.714 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.811 3.189 4 H -0.170 1.170 5 H -0.182 1.182 6 H -0.183 1.183 7 C -1.171 5.171 8 H 0.135 0.865 9 S 2.839 3.161 10 O -1.029 7.029 11 O -1.030 7.030 12 N -0.865 5.865 13 C 0.015 3.985 14 C -0.187 4.187 15 H 0.142 0.858 16 C -0.122 4.122 17 C -0.097 4.097 18 N -0.327 5.327 19 C 0.002 3.998 20 H 0.110 0.890 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.141 0.859 24 H 0.132 0.868 25 H 0.169 0.831 26 H 0.158 0.842 27 H 0.103 0.897 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.639 -8.051 -0.378 13.348 hybrid contribution -0.498 1.923 -0.370 2.020 sum 10.142 -6.129 -0.748 11.873 Atomic orbital electron populations 1.69993 1.08821 1.32402 1.41429 1.26069 0.95411 1.05457 0.87473 0.85064 0.79466 0.74904 0.79483 1.16972 1.18230 1.18267 1.30963 1.06989 1.12488 1.66671 0.86510 0.99489 0.72087 0.73196 0.71356 1.93298 1.74495 1.88294 1.46853 1.93297 1.74098 1.88331 1.47289 1.59561 1.60745 1.52372 1.13850 1.21648 0.91256 0.97703 0.87863 1.23862 0.96495 1.04224 0.94124 0.85761 1.23916 1.03531 0.89318 0.95432 1.23461 0.88837 1.04016 0.93401 1.58436 1.47621 1.16748 1.09881 1.22142 0.92317 0.97606 0.87722 0.88998 0.90965 0.89695 0.85938 0.86812 0.83092 0.84226 0.89733 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.88 13.19 21.45 0.28 -53.60 15 2 C 0.07 3.84 5.46 84.66 0.46 4.31 15 3 Si 0.99 41.35 29.54 68.60 2.03 43.38 15 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 15 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 7 C -1.04 -57.75 9.75 67.73 0.66 -57.09 15 8 H 0.12 5.90 7.81 -2.91 -0.02 5.88 15 9 S 2.74 150.84 5.31 -56.49 -0.30 150.54 15 10 O -1.04 -63.45 17.72 -128.00 -2.27 -65.72 15 11 O -1.04 -63.40 17.72 -128.00 -2.27 -65.66 15 12 N -1.03 -42.18 3.71 -502.11 -1.87 -44.04 15 13 C 0.14 4.61 6.86 86.53 0.59 5.20 15 14 C -0.17 -4.31 6.99 -9.89 -0.07 -4.38 15 15 H 0.12 3.04 8.14 -2.38 -0.02 3.02 15 16 C -0.08 -1.64 10.30 32.04 0.33 -1.32 15 17 C 0.00 -0.02 3.80 6.02 0.02 0.00 15 18 N -0.80 -19.19 9.92 -141.87 -1.41 -20.60 15 19 C 0.13 4.30 6.86 86.67 0.59 4.89 15 20 H 0.30 16.11 8.31 -92.71 -0.77 15.34 15 21 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 23 H 0.12 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.35 7.45 9.08 -89.69 -0.81 6.64 15 26 H 0.34 8.78 9.08 -89.69 -0.81 7.96 15 27 H 0.08 2.46 8.14 -2.38 -0.02 2.44 15 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 Total: -1.00 -75.85 259.72 -3.64 -79.49 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.44 Total: 24.59 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 2.60 Total: -48.38 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -2.99 Total: -118.24 kcal Atomic # 8 Polarization: -126.85 SS G_CDS: -4.54 Total: -131.38 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 150.84 SS G_CDS: -0.30 Total: 150.54 kcal Total: -75.85 -3.64 -79.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239109244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.075 kcal (2) G-P(sol) polarization free energy of solvation -75.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds