Wall clock time and date at job start Thu Apr 9 2020 12:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99643 * 2 1 4 4 H 1.48505 * 109.46821 * 269.99669 * 3 2 1 5 5 H 1.48500 * 109.47045 * 29.99252 * 3 2 1 6 6 H 1.48494 * 109.47297 * 149.99707 * 3 2 1 7 7 C 1.37878 * 120.00682 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99824 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99475 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40207 * 66.46042 * 9 7 2 11 11 O 1.42098 * 106.40144 * 293.53408 * 9 7 2 12 12 N 1.65598 * 107.21293 * 179.97438 * 9 7 2 13 13 C 1.50621 * 137.64456 * 90.00292 * 12 9 7 14 14 C 1.49904 * 80.15082 * 134.12475 * 13 12 9 15 15 H 1.08998 * 114.14116 * 289.29694 * 14 13 12 16 16 C 1.51657 * 129.40010 * 130.56947 * 14 13 12 17 17 N 1.49896 * 102.18198 * 229.62631 * 16 14 13 18 18 C 1.49446 * 106.55046 * 26.67536 * 17 16 14 19 19 C 1.42255 * 137.64972 * 269.99817 * 12 9 7 20 20 H 1.08996 * 111.13387 * 111.47543 * 19 12 9 21 21 H 0.96991 * 120.00187 * 0.02562 * 1 2 3 22 22 H 1.08998 * 114.73934 * 21.31380 * 13 12 9 23 23 H 1.09000 * 114.78396 * 246.93491 * 13 12 9 24 24 H 1.08992 * 110.86460 * 111.45290 * 16 14 13 25 25 H 1.09002 * 110.86282 * 347.79602 * 16 14 13 26 26 H 1.00905 * 110.99825 * 265.71236 * 17 16 14 27 27 H 1.08999 * 110.32928 * 127.33352 * 18 17 16 28 28 H 1.08998 * 110.32325 * 249.55200 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1938 0.0010 9 16 1.1237 -2.7200 0.0005 10 8 0.4521 -2.7955 -1.2494 11 8 0.4513 -2.7950 1.2501 12 7 2.2486 -3.9352 0.0005 13 6 3.0047 -4.7521 1.0153 14 6 2.5686 -5.8416 0.0826 15 1 1.4999 -6.0540 0.1139 16 6 3.3856 -6.9518 -0.5497 17 7 2.9990 -6.8459 -1.9940 18 6 2.5958 -5.4253 -2.2237 19 6 2.9628 -4.7068 -0.9578 20 1 4.0247 -4.4613 -0.9475 21 1 -0.4850 0.8400 -0.0004 22 1 2.5475 -4.7880 2.0041 23 1 4.0797 -4.5731 1.0367 24 1 3.1026 -7.9224 -0.1423 25 1 4.4526 -6.7711 -0.4193 26 1 2.2422 -7.4765 -2.2129 27 1 3.1439 -5.0080 -3.0684 28 1 1.5219 -5.3601 -2.3986 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239130848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:12 Heat of formation + Delta-G solvation = 15.726612 kcal Electronic energy + Delta-G solvation = -14985.964026 eV Core-core repulsion = 12360.281496 eV Total energy + Delta-G solvation = -2625.682530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 232.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06890 -35.25276 -34.95833 -33.99451 -33.09135 -29.04165 -26.86037 -26.10567 -24.76564 -21.26828 -20.62120 -18.60969 -17.05380 -16.25043 -15.93245 -15.18293 -15.01230 -14.37613 -14.12744 -13.90708 -13.38219 -12.74282 -12.41783 -12.04776 -11.68814 -11.46979 -11.23766 -11.17577 -11.07781 -10.62290 -10.52325 -10.33738 -10.25622 -9.38910 -9.26579 -8.96067 -8.60826 -8.01476 -6.70689 -5.33527 2.08671 3.05388 3.11269 3.17806 3.61036 4.04323 4.23596 4.53722 4.61137 4.93797 5.14097 5.29619 5.40325 5.53574 5.59653 5.78265 5.85990 5.91993 5.98975 6.16608 6.19555 6.45365 6.60279 7.00707 7.21238 7.30636 7.44028 7.96296 8.87353 10.22268 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.008594 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.302192 B = 3257.266823 C = 3318.991740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.023 5.023 8 H 0.100 0.900 9 S 2.724 3.276 10 O -0.996 6.996 11 O -0.997 6.997 12 N -1.021 6.021 13 C 0.156 3.844 14 C -0.174 4.174 15 H 0.101 0.899 16 C 0.051 3.949 17 N -0.672 5.672 18 C 0.050 3.950 19 C 0.098 3.902 20 H 0.087 0.913 21 H 0.291 0.709 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.338 0.662 27 H 0.087 0.913 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.385 -9.698 -0.205 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.156 5.156 8 H 0.119 0.881 9 S 2.827 3.173 10 O -0.987 6.987 11 O -0.988 6.988 12 N -0.855 5.855 13 C 0.031 3.969 14 C -0.197 4.197 15 H 0.119 0.881 16 C -0.079 4.079 17 N -0.300 5.300 18 C -0.080 4.080 19 C -0.012 4.012 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.152 0.848 27 H 0.105 0.895 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.750 -9.501 -0.517 11.666 hybrid contribution 0.002 1.622 0.318 1.653 sum 6.752 -7.879 -0.199 10.378 Atomic orbital electron populations 1.69889 1.06793 1.30771 1.40271 1.24774 0.94488 1.00856 0.88457 0.86152 0.80155 0.79986 0.79194 1.19156 1.19910 1.18678 1.30691 1.06115 1.12148 1.66669 0.88137 1.00259 0.71988 0.72198 0.72808 1.93361 1.72377 1.87323 1.45671 1.93360 1.72372 1.87367 1.45733 1.61233 1.57576 1.53430 1.13270 1.22214 0.96472 0.85789 0.92407 1.25107 1.01149 0.93473 0.99934 0.88063 1.22426 1.00071 0.97803 0.87575 1.63740 1.41749 1.04790 1.19739 1.21980 1.01070 0.88194 0.96725 1.22121 0.95671 0.90526 0.92838 0.89586 0.89857 0.89136 0.89068 0.91318 0.89811 0.84767 0.89452 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.38 13.19 55.43 0.73 -24.65 15 2 C 0.13 3.76 5.46 -17.82 -0.10 3.66 15 3 Si 0.92 20.94 29.54 -169.99 -5.02 15.92 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 15 7 C -1.02 -28.97 9.75 30.60 0.30 -28.68 15 8 H 0.10 2.63 7.81 -52.49 -0.41 2.22 15 9 S 2.72 74.37 5.56 -107.50 -0.60 73.78 15 10 O -1.00 -29.78 18.02 -57.17 -1.03 -30.81 15 11 O -1.00 -29.78 18.02 -57.17 -1.03 -30.81 15 12 N -1.02 -21.02 3.88 -217.95 -0.84 -21.87 15 13 C 0.16 2.38 8.87 -20.40 -0.18 2.20 15 14 C -0.17 -2.48 4.59 -94.93 -0.44 -2.92 15 15 H 0.10 1.59 8.10 -51.93 -0.42 1.17 15 16 C 0.05 0.58 7.36 -2.83 -0.02 0.56 15 17 N -0.67 -8.40 7.62 -111.77 -0.85 -9.26 15 18 C 0.05 0.76 7.34 -3.84 -0.03 0.74 15 19 C 0.10 1.66 5.06 -85.43 -0.43 1.22 15 20 H 0.09 1.30 7.49 -51.93 -0.39 0.91 15 21 H 0.29 7.81 8.31 -40.82 -0.34 7.47 15 22 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 23 H 0.09 1.11 7.60 -51.93 -0.39 0.72 15 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.34 3.68 8.94 -39.29 -0.35 3.33 15 27 H 0.09 1.28 8.14 -51.93 -0.42 0.85 15 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 254.53 15.07 3.84 3.84 Total: -1.00 -35.62 254.53 -8.92 -44.54 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.21 Total: 2.54 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -0.90 Total: -23.22 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.97 Total: -55.77 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -2.06 Total: -61.62 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 74.37 SS G_CDS: -0.60 Total: 73.78 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -35.62 -8.92 -44.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239130848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.264 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds